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[PATCH 14/18] gnu: Add r-seqgl.
From: |
Ricardo Wurmus |
Subject: |
[PATCH 14/18] gnu: Add r-seqgl. |
Date: |
Thu, 24 Nov 2016 17:51:35 +0100 |
* gnu/packages/bioinformatics.scm (r-seqgl): New variable.
---
gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 98dad40..89a9db1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7521,6 +7521,36 @@ must be built and this dictionary can be used for
determining kernels for DNA
Sequences.")
(license license:gpl2+))))
+(define-public r-seqgl
+ (package
+ (name "r-seqgl")
+ (version "1.1.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/ManuSetty/SeqGL/"
+ "archive/" version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0pnk1p3sci5yipyc8xnb6jbmydpl80fld927xgnbcv104hy8h8yh"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-chipkernels" ,r-chipkernels)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-spams" ,r-spams)
+ ("r-wgcna" ,r-wgcna)
+ ("r-fastcluster" ,r-fastcluster)))
+ (home-page "https://github.com/ManuSetty/SeqGL")
+ (synopsis "Group lasso for Dnase/ChIP-seq data")
+ (description "SeqGL is a group lasso based algorithm to extract
+transcription factor sequence signals from ChIP, DNase and ATAC-seq profiles.
+This package presents a method which uses group lasso to discriminate between
+bound and non bound genomic regions to accurately identify transcription
+factors bound at the specific regions.")
+ (license license:gpl2+)))
+
(define-public emboss
(package
(name "emboss")
--
2.10.2
- [PATCH 06/18] gnu: Add r-dynamictreecut., (continued)
- [PATCH 06/18] gnu: Add r-dynamictreecut., Ricardo Wurmus, 2016/11/24
- [PATCH 07/18] gnu: Add r-preprocesscore., Ricardo Wurmus, 2016/11/24
- [PATCH 08/18] gnu: Add r-fastcluster., Ricardo Wurmus, 2016/11/24
- [PATCH 09/18] gnu: Add r-wgcna., Ricardo Wurmus, 2016/11/24
- [PATCH 10/18] gnu: Add r-sfsmisc., Ricardo Wurmus, 2016/11/24
- [PATCH 11/18] gnu: Add r-kernlab., Ricardo Wurmus, 2016/11/24
- [PATCH 12/18] gnu: Add r-gtools., Ricardo Wurmus, 2016/11/24
- [PATCH 13/18] gnu: Add r-chipkernels., Ricardo Wurmus, 2016/11/24
- [PATCH 14/18] gnu: Add r-seqgl.,
Ricardo Wurmus <=
- [PATCH 15/18] gnu: Add r-gdata., Ricardo Wurmus, 2016/11/24
- [PATCH 16/18] gnu: Add r-gplots., Ricardo Wurmus, 2016/11/24
- [PATCH 17/18] gnu: Add r-rocr., Ricardo Wurmus, 2016/11/24
- [PATCH 18/18] gnu: Add r-gkmsvm., Ricardo Wurmus, 2016/11/24