Re: [PATCH] Add vcflib.

[Ricardo Wurmus]

Roel Janssen <address@hidden> writes:

> From 80d296f9d3bc205eed06f98821bb5abd3ad8d40f Mon Sep 17 00:00:00 2001
> From: Roel Janssen <address@hidden>
> Date: Tue, 26 Apr 2016 19:35:10 +0200
> Subject: [PATCH] gnu: Add multichoose.
>
> * gnu/packages/bioinformatics.scm (multichoose): New variable.
> ---
>  gnu/packages/bioinformatics.scm | 34 ++++++++++++++++++++++++++++++++++
>  1 file changed, 34 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 620439f..b3686b6 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -5075,6 +5075,40 @@ the same group, and look for consistent differences 
> between ChIP and control
>  group or two ChIP groups run under different conditions.")
>      (license license:gpl3+)))
>  
> +(define-public multichoose
> +  (package
> +    (name "multichoose")
> +    (version "1.0.3")
> +    (source (origin
> +      (method url-fetch)
> +      (uri (string-append "https://github.com/ekg/multichoose/archive/v";
> +                          version ".tar.gz"))
> +      (file-name (string-append name "-" version ".tar.gz"))
> +      (sha256
> +       (base32 "0xy86vvr3qrs4l81qis7ia1q2hnqv0xcb4a1n60smxbhqqis5w3l"))))
> +    (build-system gnu-build-system)
> +    (arguments
> +     `(#:tests? #f ; There are no tests to run.
> +       #:phases
> +       (modify-phases %standard-phases
> +         (delete 'configure) ; There is no configure phase.
> +         (replace 'install
> +           (lambda* (#:key outputs #:allow-other-keys)
> +             (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
> +               (install-file "multichoose" bin)
> +               (install-file "multipermute" bin)))))))
> +    (native-inputs
> +     `(("python" ,python-2)
> +       ("node" ,node)))
> +    (home-page "https://github.com/ekg/multichoose";)
> +    (synopsis "Library for loopless multiset combination generation")
> +    (description "This package provides a library implementing an efficient
> +loopless multiset combination generation algorithm which is (approximately)
> +described in \"Loopless algorithms for generating permutations, combinations,
> +and other combinatorial configurations.\" G Ehrlich - Journal of the ACM 
> (JACM),
> +1973. (Algorithm 7.)")
> +    (license license:expat)))
> +
>  (define-public filevercmp
>    (let ((commit "1a9b779b93d0b244040274794d402106907b71b7"))
>      (package

This one is also not in Guix upstream yet.  Must have fallen through the
cracks.  This could be pushed after adding “#t” to the end of the new
“install” phase.

-- 
Ricardo