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OpenBLAS and performance


From: Pjotr Prins
Subject: OpenBLAS and performance
Date: Tue, 19 Dec 2017 11:49:56 +0100
User-agent: Mutt/1.5.21 (2010-09-15)

The last weeks I have been toying with OpenBlas and tweaking it boosts
performance magnificently over the standard install we do now. A
configuration for Haswell looks like:

  
https://gitlab.com/genenetwork/guix-bioinformatics/blob/master/gn/packages/gemma.scm#L64

It will benefit python-numpy and R users greatly to use
multi-threading (particularly). How do we make a flavour that supports
this.

Or are channels going to solve this for us?

Btw the latest stable release worked fine too:

  
https://gitlab.com/genenetwork/guix-bioinformatics/commit/474524a5a0d57744c1727442b33d8f2889eb0397

Pj.



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