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[bug#30570] [PATCH 09/16] gnu: Add Diversitree.
From: |
Leo Famulari |
Subject: |
[bug#30570] [PATCH 09/16] gnu: Add Diversitree. |
Date: |
Wed, 21 Feb 2018 14:35:13 -0500 |
* gnu/packages/bioinformatics.scm (r-diversitree): New variable.
---
gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 820bd84d6..3353565cf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9,6 +9,7 @@
;;; Copyright © 2016, 2018 Raoul Bonnal <address@hidden>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <address@hidden>
;;; Copyright © 2017 Arun Isaac <address@hidden>
+;;; Copyright © 2018 Joshua Sierles, Nextjournal <address@hidden>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -11886,3 +11887,34 @@ variable number of row and column annotations. Loom
also supports sparse
graphs. This library makes it easy to work with @file{.loom} files for
single-cell RNA-seq data.")
(license license:bsd-3)))
+
+(define-public r-diversitree
+ (package
+ (name "r-diversitree")
+ (version "0.9-10")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "diversitree" version))
+ (sha256
+ (base32
+ "0gh4rcrp0an3jh8915i1fsxlgyfk7njywgbd5ln5r2jhr085kpz7"))))
+ (build-system r-build-system)
+ (native-inputs
+ `(("gfortran" ,gfortran)))
+ (inputs `(("fftw" ,fftw) ("gsl" ,gsl)))
+ (propagated-inputs
+ `(("r-ape" ,r-ape)
+ ("r-desolve" ,r-desolve)
+ ("r-rcpp" ,r-rcpp)
+ ("r-suplex" ,r-subplex)))
+ (home-page "https://www.zoology.ubc.ca/prog/diversitree")
+ (synopsis "Comparative 'Phylogenetic' Analyses of Diversification")
+ (description "This package contains a number of comparative
\"phylogenetic\"
+methods, mostly focusing on analysing diversification and character evolution.
+Contains implementations of \"BiSSE\" (Binary State Speciation and Extinction)
+and its unresolved tree extensions, \"MuSSE\" (Multiple State Speciation and
+Extinction), \"QuaSSE\", \"GeoSSE\", and \"BiSSE-ness\" Other included methods
+include Markov models of discrete and continuous trait evolution and constant
+rate speciation and extinction.")
+ (license license:gpl2+)))
--
2.16.1
- [bug#30570] [PATCH 06/16] gnu: Add r-geosphere., (continued)
- [bug#30570] [PATCH 06/16] gnu: Add r-geosphere., Leo Famulari, 2018/02/21
- [bug#30570] [PATCH 16/16] gnu: Add python-feather-format., Leo Famulari, 2018/02/21
- [bug#30570] [PATCH 15/16] gnu: Add python-pyarrow., Leo Famulari, 2018/02/21
- [bug#30570] [PATCH 03/16] gnu: Add r-maps., Leo Famulari, 2018/02/21
- [bug#30570] [PATCH 11/16] gnu: Add r-ggmap., Leo Famulari, 2018/02/21
- [bug#30570] [PATCH 08/16] gnu: Add r-desolve., Leo Famulari, 2018/02/21
- [bug#30570] [PATCH 10/16] gnu: Add r-jpeg., Leo Famulari, 2018/02/21
- [bug#30570] [PATCH 13/16] gnu: Add google-brotli., Leo Famulari, 2018/02/21
- [bug#30570] [PATCH 04/16] gnu: Add r-mapproj., Leo Famulari, 2018/02/21
- [bug#30570] [PATCH 12/16] gnu: Add r-feather., Leo Famulari, 2018/02/21
- [bug#30570] [PATCH 09/16] gnu: Add Diversitree.,
Leo Famulari <=
- [bug#30570] [PATCH 14/16] gnu: Add apache-arrow., Leo Famulari, 2018/02/21
- [bug#30570] [PATCH 05/16] gnu: Add Rgooglemaps., Leo Famulari, 2018/02/21
- [bug#30570] [PATCH 07/16] gnu: Add r-subplex., Leo Famulari, 2018/02/21