|
From: | Uri Shwed |
Subject: | Re: [igraph] cohesive.blocks V0.5 |
Date: | Tue, 12 Feb 2008 14:46:00 -0500 |
User-agent: | Mozilla Thunderbird 1.0.7 (Windows/20050923) |
Hi Gabor and Peter,See what I get and some data below. I'm using R 2.6.2 on Scientific Linux 4.5. I've just installed R today, and I'm a newby in both R and unix. Regarding bigger networks - If I have sufficient computing power, you don't think this could work? Are you familiar with other packages that could work better? I have access to a cluster of 9 machines, with a total of 82G memory on them. My largest network is 12k nodes and 70k edges, but maybe I can omit it. the second largest is 3k edges and 5k nodes. (these are scientific citation networks).
Thanks so much for all your work, Uri Browse[1]> cohesive.blocks(cancer[[1965]][[3]]) Error during wrapup: no applicable method for "as.double" Browse[1]> cancer[[1965]][[3]] Vertices: 289 Edges: 50 Directed: TRUE Edges: [0] 223 -> 213 [1] 225 -> 210 [2] 226 -> 78 [3] 227 -> 218 [4] 229 -> 171 [5] 229 -> 183 [6] 229 -> 215 [7] 230 -> 240 [8] 231 -> 78 [9] 231 -> 154 [10] 236 -> 149 [11] 236 -> 80 [12] 239 -> 227 [13] 242 -> 149 [14] 242 -> 183 [15] 243 -> 183 [16] 243 -> 215 [17] 243 -> 67 [18] 243 -> 232 [19] 244 -> 12 [20] 244 -> 201 [21] 244 -> 150 [22] 244 -> 11 [23] 244 -> 66 [24] 246 -> 240 [25] 246 -> 183 [26] 249 -> 156 [27] 249 -> 159 [28] 254 -> 242 [29] 254 -> 88 [30] 254 -> 244 [31] 255 -> 154 [32] 255 -> 231 [33] 256 -> 88 [34] 260 -> 130 [35] 260 -> 157 [36] 264 -> 183 [37] 266 -> 67 [38] 266 -> 232 [39] 266 -> 243 [40] 273 -> 88 [41] 275 -> 288 [42] 277 -> 247 [43] 277 -> 246 [44] 279 -> 88 [45] 279 -> 249 [46] 281 -> 225 [47] 287 -> 286 [48] 287 -> 285 [49] 288 -> 78 Gabor Csardi wrote:
Uri, i have just installed that version, it works fine. What is your platform? What exactly is the command you're trying to run? Can you send me a small network on which i can reproduce the problem?Gaborps. i don't think you can run it on such a big network, except if your network is very specialOn Tue, Feb 12, 2008 at 01:27:18PM -0500, Uri Shwed wrote:Hi Gabor and all,I need to get cohesive blocks for a networks >12k nodes...I understood that I should get V0.5 for that, but it doesn't work for me...Anyone tried this already? Here's what I get: Error in UseMethod("as.double") : no applicable method for "as.double"It worked with v0.45 on some of my smaller networks, now those don't work either.Any ideas? Thanks, Uri -- Uri Shwed ISERP, Columbia University Room 805, 420 W 118th St. New York 10027 NY Tel: 212 854 9374 _______________________________________________ igraph-help mailing list address@hidden http://lists.nongnu.org/mailman/listinfo/igraph-help
-- Uri Shwed ISERP, Columbia University Room 805, 420 W 118th St. New York 10027 NY Tel: 212 854 9374
[Prev in Thread] | Current Thread | [Next in Thread] |