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Re: [igraph] How to remove vertex attribute in python igraph
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From: |
Gábor Csárdi |
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Subject: |
Re: [igraph] How to remove vertex attribute in python igraph |
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Date: |
Wed, 14 Jan 2009 14:52:47 +0100 |
OK, the problem is that you have an attribute called 'id' in the
graphml file. igraph automatically tries to add an attribute called
'id' for the node ids, and you have another one, so you end up with
two attributes called 'id'. This should not be possible, but it seems
that neither the GraphML code, nor the igraph attribute code checks
it.
Some functions are happy with this, like the 'dot' writer (does it
query attributes at all?), but it seems that the Pajek writer cannot
handle the case.
A simple workaround would be to rename the attribute, e.g. replace all
"id" to "id2" in the file.
I will update the code to handle these situations better, e.g. by
giving a warnings and renaming the attribute, or something similar.
Thanks for the report,
Gabor
On Tue, Jan 13, 2009 at 8:48 PM, Gábor Csárdi <address@hidden> wrote:
> I think this is a bug that was corrected in the development branch,
> because I have it with 0.5.1, but not with 0.6. Plus the bug is in the
> C code, I have it with R as well.
>
> I cannot find the correction, however, will look at it again later,
> perhaps tomorrow......
>
> FYI,
> Gabor
>
> On Tue, Jan 13, 2009 at 7:05 PM, Simone Gabbriellini
> <address@hidden> wrote:
>> Tamas,
>>
>> thank you!
>>
>> here it is (btw no problem saving in "dot" format, just in "net" format):
>>
>> <?xml version="1.0" encoding="UTF-8"?>
>> <graphml xmlns="http://graphml.graphdrawing.org/xmlns";
>> xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
>> xsi:schemaLocation="http://graphml.graphdrawing.org/xmlns
>> http://graphml.graphdrawing.org/xmlns/1.0/graphml.xsd";>
>> <!-- Created by igraph -->
>> <key id="color" for="node" attr.name="color" attr.type="string"/>
>> <key id="id" for="node" attr.name="id" attr.type="string"/>
>> <key id="color" for="edge" attr.name="color" attr.type="string"/>
>> <key id="weight" for="edge" attr.name="weight" attr.type="double"/>
>> <graph id="G" edgedefault="directed">
>> <node id="n0">
>> <data key="color">blue</data>
>> <data key="id">Lukather</data>
>> </node>
>> <node id="n1">
>> <data key="color">blue</data>
>> <data key="id">Gae</data>
>> </node>
>> <node id="n2">
>> <data key="color">blue</data>
>> <data key="id">milordz</data>
>> </node>
>> <node id="n3">
>> <data key="color">red</data>
>> <data key="id">Ouba</data>
>> </node>
>> <node id="n4">
>> <data key="color">blue</data>
>> <data key="id">Sualtan</data>
>> </node>
>> <node id="n5">
>> <data key="color">blue</data>
>> <data key="id">Brenn Tantor</data>
>> </node>
>> <node id="n6">
>> <data key="color">red</data>
>> <data key="id">Tremors</data>
>> </node>
>> <node id="n7">
>> <data key="color">red</data>
>> <data key="id">Shariz</data>
>> </node>
>> <node id="n8">
>> <data key="color">blue</data>
>> <data key="id">Flazzer</data>
>> </node>
>> <node id="n9">
>> <data key="color">red</data>
>> <data key="id">Quill</data>
>> </node>
>> <node id="n10">
>> <data key="color">blue</data>
>> <data key="id">Speed_399</data>
>> </node>
>> <node id="n11">
>> <data key="color">red</data>
>> <data key="id">OrkoPazZo</data>
>> </node>
>> <node id="n12">
>> <data key="color">blue</data>
>> <data key="id">skyline</data>
>> </node>
>> <node id="n13">
>> <data key="color">blue</data>
>> <data key="id">Bube</data>
>> </node>
>> <node id="n14">
>> <data key="color">blue</data>
>> <data key="id">FURIO FUNI</data>
>> </node>
>> <node id="n15">
>> <data key="color">blue</data>
>> <data key="id">Marco_Rsr</data>
>> </node>
>> <node id="n16">
>> <data key="color">blue</data>
>> <data key="id">Pendragon</data>
>> </node>
>> <node id="n17">
>> <data key="color">blue</data>
>> <data key="id">reasae</data>
>> </node>
>> <node id="n18">
>> <data key="color">blue</data>
>> <data key="id">Ardo</data>
>> </node>
>> <node id="n19">
>> <data key="color">blue</data>
>> <data key="id">Lukenet</data>
>> </node>
>> <node id="n20">
>> <data key="color">blue</data>
>> <data key="id">sNatch</data>
>> </node>
>> <node id="n21">
>> <data key="color">blue</data>
>> <data key="id">Klingo</data>
>> </node>
>> <node id="n22">
>> <data key="color">blue</data>
>> <data key="id">ginkobiloba</data>
>> </node>
>> <node id="n23">
>> <data key="color">blue</data>
>> <data key="id">Frederick Brae</data>
>> </node>
>> <node id="n24">
>> <data key="color">blue</data>
>> <data key="id">Nemi</data>
>> </node>
>> <node id="n25">
>> <data key="color">blue</data>
>> <data key="id">Madix</data>
>> </node>
>> <node id="n26">
>> <data key="color">blue</data>
>> <data key="id">Kveld</data>
>> </node>
>> <node id="n27">
>> <data key="color">blue</data>
>> <data key="id">Mondovich</data>
>> </node>
>> <node id="n28">
>> <data key="color">blue</data>
>> <data key="id">Manand</data>
>> </node>
>> <node id="n29">
>> <data key="color">blue</data>
>> <data key="id">Aiken</data>
>> </node>
>> <node id="n30">
>> <data key="color">blue</data>
>> <data key="id">rukwa</data>
>> </node>
>> <node id="n31">
>> <data key="color">blue</data>
>> <data key="id">azor</data>
>> </node>
>> <node id="n32">
>> <data key="color">blue</data>
>> <data key="id">Fds</data>
>> </node>
>> <node id="n33">
>> <data key="color">blue</data>
>> <data key="id">Tiger</data>
>> </node>
>> <node id="n34">
>> <data key="color">blue</data>
>> <data key="id">Yusaku</data>
>> </node>
>> <node id="n35">
>> <data key="color">blue</data>
>> <data key="id">silverk75</data>
>> </node>
>> <node id="n36">
>> <data key="color">blue</data>
>> <data key="id">Figus</data>
>> </node>
>> <edge source="n0" target="n1">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n0" target="n10">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n11">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n12">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n13">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n14">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n15">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n16">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n17">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n19">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n2">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n20">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n29">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n3">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n4">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n5">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n6">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n7">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n8">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n0" target="n9">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n1" target="n0">
>> <data key="color">blue</data>
>> <data key="weight">5</data>
>> </edge>
>> <edge source="n1" target="n10">
>> <data key="color">blue</data>
>> <data key="weight">3</data>
>> </edge>
>> <edge source="n1" target="n11">
>> <data key="color">blue</data>
>> <data key="weight">7</data>
>> </edge>
>> <edge source="n1" target="n12">
>> <data key="color">blue</data>
>> <data key="weight">5</data>
>> </edge>
>> <edge source="n1" target="n13">
>> <data key="color">blue</data>
>> <data key="weight">5</data>
>> </edge>
>> <edge source="n1" target="n14">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n1" target="n15">
>> <data key="color">blue</data>
>> <data key="weight">6</data>
>> </edge>
>> <edge source="n1" target="n16">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n1" target="n17">
>> <data key="color">blue</data>
>> <data key="weight">5</data>
>> </edge>
>> <edge source="n1" target="n18">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n1" target="n19">
>> <data key="color">blue</data>
>> <data key="weight">6</data>
>> </edge>
>> <edge source="n1" target="n2">
>> <data key="color">blue</data>
>> <data key="weight">3</data>
>> </edge>
>> <edge source="n1" target="n20">
>> <data key="color">blue</data>
>> <data key="weight">3</data>
>> </edge>
>> <edge source="n1" target="n21">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n1" target="n22">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n1" target="n25">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n1" target="n27">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n1" target="n28">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n1" target="n29">
>> <data key="color">blue</data>
>> <data key="weight">3</data>
>> </edge>
>> <edge source="n1" target="n3">
>> <data key="color">blue</data>
>> <data key="weight">9</data>
>> </edge>
>> <edge source="n1" target="n30">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n1" target="n34">
>> <data key="color">blue</data>
>> <data key="weight">3</data>
>> </edge>
>> <edge source="n1" target="n4">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n1" target="n5">
>> <data key="color">blue</data>
>> <data key="weight">8</data>
>> </edge>
>> <edge source="n1" target="n6">
>> <data key="color">blue</data>
>> <data key="weight">7</data>
>> </edge>
>> <edge source="n1" target="n7">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n1" target="n8">
>> <data key="color">blue</data>
>> <data key="weight">5</data>
>> </edge>
>> <edge source="n1" target="n9">
>> <data key="color">blue</data>
>> <data key="weight">6</data>
>> </edge>
>> <edge source="n10" target="n0">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n10" target="n1">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n10" target="n11">
>> <data key="color">blue</data>
>> <data key="weight">3</data>
>> </edge>
>> <edge source="n10" target="n12">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n10" target="n13">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n10" target="n14">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n10" target="n15">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n10" target="n16">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n10" target="n17">
>> <data key="color">blue</data>
>> <data key="weight">3</data>
>> </edge>
>> <edge source="n10" target="n18">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n10" target="n19">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n10" target="n2">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n10" target="n20">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n10" target="n29">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n10" target="n3">
>> <data key="color">blue</data>
>> <data key="weight">3</data>
>> </edge>
>> <edge source="n10" target="n4">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n10" target="n5">
>> <data key="color">blue</data>
>> <data key="weight">3</data>
>> </edge>
>> <edge source="n10" target="n6">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n10" target="n7">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n10" target="n8">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n10" target="n9">
>> <data key="color">blue</data>
>> <data key="weight">3</data>
>> </edge>
>> <edge source="n11" target="n0">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n11" target="n1">
>> <data key="color">blue</data>
>> <data key="weight">9</data>
>> </edge>
>> <edge source="n11" target="n10">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n11" target="n12">
>> <data key="color">blue</data>
>> <data key="weight">7</data>
>> </edge>
>> <edge source="n11" target="n13">
>> <data key="color">blue</data>
>> <data key="weight">6</data>
>> </edge>
>> <edge source="n11" target="n14">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n11" target="n15">
>> <data key="color">blue</data>
>> <data key="weight">8</data>
>> </edge>
>> <edge source="n11" target="n16">
>> <data key="color">blue</data>
>> <data key="weight">5</data>
>> </edge>
>> <edge source="n11" target="n17">
>> <data key="color">blue</data>
>> <data key="weight">6</data>
>> </edge>
>> <edge source="n11" target="n18">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n11" target="n19">
>> <data key="color">blue</data>
>> <data key="weight">8</data>
>> </edge>
>> <edge source="n11" target="n2">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n11" target="n20">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n11" target="n21">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n11" target="n22">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n11" target="n23">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n11" target="n25">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n11" target="n27">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n11" target="n29">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n11" target="n3">
>> <data key="color">blue</data>
>> <data key="weight">11</data>
>> </edge>
>> <edge source="n11" target="n30">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n11" target="n34">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n11" target="n4">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n11" target="n5">
>> <data key="color">blue</data>
>> <data key="weight">14</data>
>> </edge>
>> <edge source="n11" target="n6">
>> <data key="color">blue</data>
>> <data key="weight">9</data>
>> </edge>
>> <edge source="n11" target="n7">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n11" target="n8">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n11" target="n9">
>> <data key="color">blue</data>
>> <data key="weight">10</data>
>> </edge>
>> <edge source="n12" target="n0">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n12" target="n1">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n12" target="n10">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n12" target="n11">
>> <data key="color">blue</data>
>> <data key="weight">7</data>
>> </edge>
>> <edge source="n12" target="n13">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n12" target="n14">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n12" target="n15">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n12" target="n16">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n12" target="n17">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n12" target="n18">
>> <data key="color">blue</data>
>> <data key="weight">6</data>
>> </edge>
>> <edge source="n12" target="n19">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n12" target="n2">
>> <data key="color">blue</data>
>> <data key="weight">6</data>
>> </edge>
>> <edge source="n12" target="n20">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n12" target="n21">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n12" target="n22">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n12" target="n23">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n12" target="n28">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n12" target="n29">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n12" target="n3">
>> <data key="color">blue</data>
>> <data key="weight">5</data>
>> </edge>
>> <edge source="n12" target="n30">
>> <data key="color">blue</data>
>> <data key="weight">5</data>
>> </edge>
>> <edge source="n12" target="n33">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n12" target="n34">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n12" target="n4">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n12" target="n5">
>> <data key="color">blue</data>
>> <data key="weight">11</data>
>> </edge>
>> <edge source="n12" target="n6">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n12" target="n7">
>> <data key="color">blue</data>
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>> <edge source="n9" target="n20">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n9" target="n21">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> <edge source="n9" target="n22">
>> <data key="color">blue</data>
>> <data key="weight">3</data>
>> </edge>
>> <edge source="n9" target="n23">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n9" target="n25">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n9" target="n27">
>> <data key="color">blue</data>
>> <data key="weight">1</data>
>> </edge>
>> <edge source="n9" target="n29">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n9" target="n3">
>> <data key="color">blue</data>
>> <data key="weight">6</data>
>> </edge>
>> <edge source="n9" target="n34">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n9" target="n4">
>> <data key="color">blue</data>
>> <data key="weight">3</data>
>> </edge>
>> <edge source="n9" target="n5">
>> <data key="color">blue</data>
>> <data key="weight">7</data>
>> </edge>
>> <edge source="n9" target="n6">
>> <data key="color">blue</data>
>> <data key="weight">5</data>
>> </edge>
>> <edge source="n9" target="n7">
>> <data key="color">blue</data>
>> <data key="weight">2</data>
>> </edge>
>> <edge source="n9" target="n8">
>> <data key="color">blue</data>
>> <data key="weight">4</data>
>> </edge>
>> </graph>
>> </graphml>
>>
>>
>> _______________________________________________
>> igraph-help mailing list
>> address@hidden
>> http://lists.nongnu.org/mailman/listinfo/igraph-help
>>
>
>
>
> --
> Gabor Csardi <address@hidden> UNIL DGM
>
--
Gabor Csardi <address@hidden> UNIL DGM
- [igraph] How to remove vertex attribute in python igraph, Simone Gabbriellini, 2009/01/13
- Re: [igraph] How to remove vertex attribute in python igraph, Tamas Nepusz, 2009/01/13
- Re: [igraph] How to remove vertex attribute in python igraph, Simone Gabbriellini, 2009/01/13
- Re: [igraph] How to remove vertex attribute in python igraph, Gábor Csárdi, 2009/01/13
- Re: [igraph] How to remove vertex attribute in python igraph,
Gábor Csárdi <=
- Re: [igraph] How to remove vertex attribute in python igraph, Simone Gabbriellini, 2009/01/14
- Re: [igraph] How to remove vertex attribute in python igraph, Gábor Csárdi, 2009/01/14
- Re: [igraph] How to remove vertex attribute in python igraph, Simone Gabbriellini, 2009/01/14
- Re: [igraph] How to remove vertex attribute in python igraph, Gábor Csárdi, 2009/01/14