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[igraph] get adjacency matrix


From: Simone Gabbriellini
Subject: [igraph] get adjacency matrix
Date: Thu, 15 Jan 2009 10:20:42 +0100

hi List,

is it possible to convert the get_adjacency matrix to a numpy.array?

I do:

matrixAdjacency = igraph.Graph.get_adjacency(g)
matrixNumpy = numpy.array(matrixAdjacency)

but it doesn't seem to be correct, because I have:

Out[53]:
array(Matrix([
 [0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 0,
0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0],
 [1, 0, 1, 2, 1, 2, 2, 1, 1, 1, 1, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
0, 0, 1, 0, 1, 1, 1, 1, 0, 0, 0, 1, 0, 0],
 [1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 1,
0, 0, 1, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0],
 [1, 2, 1, 0, 1, 2, 2, 2, 1, 2, 1, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 0, 1, 1, 1, 1, 0, 1, 0, 1, 0, 0],
 [1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 1,
0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 1, 0, 0],
 [1, 2, 1, 2, 1, 0, 2, 1, 1, 1, 1, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 0, 0],
 [1, 2, 1, 2, 1, 2, 0, 1, 1, 1, 1, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 0, 1, 0, 1, 1, 1, 1, 0, 0, 0, 1, 0, 0],
 [1, 1, 1, 2, 1, 1, 1, 0, 1, 2, 1, 2, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 0,
0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0],
 [1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1,
0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0],
 [1, 1, 1, 1, 1, 1, 1, 2, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 0, 1, 0, 1, 0, 1, 0, 0, 0, 0, 1, 0, 0],
 [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0,
0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0],
 [1, 2, 1, 2, 1, 2, 2, 2, 1, 2, 1, 0, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 0, 1, 0, 1, 0, 1, 1, 0, 0, 0, 1, 0, 0],
 [1, 2, 1, 2, 1, 2, 2, 1, 1, 1, 1, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 1, 1, 0, 0],
 [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 0, 1, 1, 1, 1,
0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0],
 [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 0, 1, 1, 1, 1,
0, 0, 1, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0],
 [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 1, 1, 1, 1,
0, 0, 1, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0],
 [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1,
1, 0, 1, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0],
 [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 1, 1, 1,
0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0],
 [0, 1, 1, 1, 0, 1, 1, 0, 0, 1, 1, 1, 1, 0, 0, 1, 1, 1, 0, 1, 0, 0, 0,
1, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0],
 [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 0, 0,
1, 0, 1, 0, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0],
 [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 0, 0, 0,
0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0],
 [0, 1, 0, 1, 0, 1, 1, 0, 1, 1, 0, 1, 0, 1, 1, 1, 1, 1, 0, 1, 0, 0, 1,
0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0],
 [0, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 1, 0, 1, 0,
0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0],
 [0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 1, 0, 0, 0, 0, 1, 0, 1, 1, 0, 0, 0,
0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0],
 [0, 0, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0],
 [0, 1, 1, 1, 0, 1, 1, 0, 0, 1, 0, 1, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 1,
0, 1, 0, 0, 1, 1, 0, 1, 0, 0, 0, 1, 0, 0],
 [0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0,
0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0],
 [0, 1, 0, 1, 0, 1, 1, 0, 0, 1, 0, 1, 0, 0, 0, 0, 1, 0, 1, 1, 0, 1, 0,
1, 1, 1, 1, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0],
 [0, 1, 1, 1, 0, 1, 1, 0, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 0, 1, 0, 0, 0,
1, 0, 1, 0, 1, 0, 0, 1, 0, 1, 0, 0, 0, 0],
 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
 [0, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0,
1, 0, 1, 0, 0, 1, 0, 0, 1, 0, 1, 0, 0, 0],
 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0],
 [0, 0, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0],
 [0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
 [0, 1, 0, 1, 1, 1, 1, 0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 1,
0, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0],
 [0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0],
 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]]), dtype=object)


Am I missing something?

thank you,
Simone




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