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[igraph] Finding motifs in a biochemical network


From: anupam sinha
Subject: [igraph] Finding motifs in a biochemical network
Date: Fri, 16 Jan 2009 12:17:08 +0530

Hi,
     I am working on evolution of biochemical networks. Basically I am checking for the presence or absence of network motifs across the tree of life.But using  the "graph.motif" function of igraph package gives me the following output.

> g<-erdos.renyi.game(100,3/100)

> graph.motifs(g)
[1]   0   0 607   5

The output is just a numerical distribution of the no. of 3/4 node motifs.I wish to get more specific results ,for e.g., the nodes which are actually taking part in motif formation (their numeric ids).Can anyone help me with that???? Thanking you in advance.


Regards,
Anupam Sinha

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