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[igraph] Adjacency list to edgelist


From: anupam sinha
Subject: [igraph] Adjacency list to edgelist
Date: Tue, 9 Mar 2010 18:09:47 +0530

Dear all,

                   I have a number of graphs in this format (adjacency list) :

PABPC4    PABPC4    EEF1A1    SETDB1    XRN1    RIF1   
AHCY         AHCY   
PSCDBP   PSCDBP    PSCD1   
ITSN2        ITSN2    WAS    RAD9A    LSM8    SYNJ2   
TICAM2     TICAM2    IL1R1    IRAK1    TRAF6    IRF3    TLR4    IL1RAP    IRAK3    IRF7    TIRAP   
ADCY3      CAMK2G    ADCY3   
ADCY6      ADCY6    CHRNA7    GNAS    RAF1   
FHL3          FHL3    ACTB    CDC25B    MAPK1    LASP1    KLF8    CTBP2    FHL2    ZNF42    SRF    CDC42EP1    PHC2    PCQAP   
TM9SF2    TM9SF2    RAB9A   

where the alphanumeric id represents the node name (gene name). The first column contains the source node and the other columns have the destination nodes. How do I convert this into an edgelist format using R implementation of igraph ? Thanks in advance for any suggestions.


Regards,


Anupam

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