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From: | Gábor Csárdi |
Subject: | Re: [igraph] build or R version fails in R 3.0.0 |
Date: | Sat, 6 Apr 2013 22:33:06 -0400 |
Hi Gábor,I do not seem to have a problem with libxml (the compilation before worked fine with only 64 bit, and the error is the same not using the --no-multiarch flag). I rather think form the message that igraph cannot find the location of libxmlls -l /usr/lib/libxml*-rwxr-xr-x 1 root wheel 2390032 3 Oct 2012 /usr/lib/libxml2.2.dyliblrwxr-xr-x 1 root wheel 15 3 Oct 2012 /usr/lib/libxml2.dylib -> libxml2.2.dylibI recall that there were some issues reported in R help with some libraries getting installed (referenced?) in the wrong places in version 3.0.0. I think this is the case:@rpath/libxml2.2.dylib does not seem to be found (what is @rpath?)Sorry to bother you, but my knowledge of compilation is VERY limited and use version 0.7 since some of the functionality is not available in the official release.KInd regards,BobOn 6 April 2013 16:12, Gábor Csárdi <address@hidden> wrote:
Hi Bob,R CMD INSTALL igraph_nightly_0.6.5-3106-20130304.tar.gzworks fine for me on OS X 10.6.8. From R 3.0 R itself and all packages are 64 bit only, so you don't need the --no-multiarch flag. But you do need some 64 bit system libraries, like libxml2.2.So I guess that the problem is that libxml2.2 is 32-bit only on your system.G.On Sat, Apr 6, 2013 at 8:32 AM, Bob Pap <address@hidden> wrote:
_______________________________________________Dear Tamás,Build fails in the new R (3.0.0). Any suggestions?command:R CMD INSTALL --no-multiarch ~/Downloads/igraph_nightly_0.7-3137-20130302.tar.gzcompilation works, but test failsinstalling to /Library/Frameworks/R.framework/Versions/3.0/Resources/library/igraph/libs** R** demo** inst** preparing package for lazy loading** help*** installing help indices** building package indices** testing if installed package can be loadedError : .onLoad failed in loadNamespace() for 'igraph', details:call: dyn.load(file, DLLpath = DLLpath, ...)error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/igraph/libs/igraph.so':dlopen(/Library/Frameworks/R.framework/Versions/3.0/Resources/library/igraph/libs/igraph.so, 10): Library not loaded: @rpath/libxml2.2.dylibReferenced from: /Library/Frameworks/R.framework/Versions/3.0/Resources/library/igraph/libs/igraph.soReason: image not foundError: loading failedExecution haltedERROR: loading failed* removing ‘/Library/Frameworks/R.framework/Versions/3.0/Resources/library/igraph’* restoring previous ‘/Library/Frameworks/R.framework/Versions/3.0/Resources/library/igraph’--Kindly,Bob Pap
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Gabor Csardi <address@hidden> MTA KFKI RMKI
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--Kindly,Bob Pap
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