Hi,
I am trying to use igraph on gcp instance. But install.packages("igraph") call gives me below error:
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** building package indices
** testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/usr/lib64/R/library/igraph/libs/igraph.so':
/usr/lib64/R/library/igraph/libs/igraph.so: undefined symbol: _ZSt24__throw_out_of_range_fmtPKcz
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/usr/lib64/R/library/igraph’
The downloaded source packages are in
‘/tmp/RtmpishFZa/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("igraph") :
installation of package ‘igraph’ had non-zero exit status
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R session Info :
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R version 3.3.3 (2017-03-06)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
__________________
Compiler version
_________
g++ --version
g++ (GCC) 5.3.1 20160406 (Red Hat 5.3.1-6)
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_____________
Requesting you to direct me to resolve this error. I am totally uninitialized in C. But a week of reading into this error makes me understand that this error is due to some C/C++ compatibility issues.
Regards,
Shruti Desai
Research Scientist - Oncogenomics,
Mumbai.
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