Notes lining up, and warnings

[Father Gordon Gilbert]

Can someone help me here?  On this Anglican chant , in the tenth
measure (end of the first section of verse two) the melody notes are
1/2 notes and the harmony notes are whole notes, yet in my pdf viewer,
they are not lined up as I would like them.  I've tried in
LilyPondTool to shift them a bit, but it doesn't seem to be working
for some reason.  (It introduces a horiz. shift expression into the
line, but it seems to have no effect.)

Windoze XP Pro, jEdit with LilyPondTool

Here is my code for Psalm121.ly

\header {
        filename = "Psalm121.ly"
        enteredby = "Gordon Gilbert"
        composer = "Anglican Chant"
        poet = ""
        date="2011"
        title = "I Will Lift Up Mine Eyes"
        subtitle = "Psalm 121"
        metre = ""
        meter = \metre
        arranger = "Gordon Gilbert"
        copyright = ""
        style =  ""
        mutopiacomposer = \composer
        mutopiapoet=\poet
        maintainer = "Gordon Gilbert"
        maintainerEmail = "address@hidden"
        lastupdated = "2011 * March * 22"
}

\version "2.13.29"
\paper{
        #(set-paper-size "letter")
}

global= {
    \time 4/4 \key d \major
 \override Staff.TimeSignature #'transparent = ##t
}

sop = \context Voice = "sop"   {
        \voiceOne
        \relative {
        fis1 a2 b d1
        \bar "||"
        fis,1 a2 b a a a1
        \bar "||"
        a1 b2 d2 cis( b)
        \bar "||"
        fis1 a2 b a e fis1
        \bar "||"
        }
}

alto = \context Voice = "alto"   {
        \voiceTwo
        \relative {
        %r1*3
        d1 e2 fis g1
        d1 e2 d e e fis1
        %r1*3
        d1 fis2 fis #'(0.9 . 0.0 ) e1
        d1 cis2 d e cis d1
}       }
        
tenor = \context Voice = "tenor"   {
        \voiceOne
        \relative {
        %r1*3
        a1 a2 b b1
        b1 cis2 b d cis a1
        %r1*3
        a1 b2 b b,1
        b1 a'2 b a a a1
        
}}
        
bass = \context Voice = "bass"   {
        \voiceTwo
        \relative {
        %r1*3
        d,1 cis2 b g1
        b1 a2 g a2 a d1
        %r1*3
        d1 fis2 fis b1
        b1 a,2 g a a <d d,>1
        
}}



text =  {
        
}



\score {
         \context ChoirStaff <<
        
                \context Staff ="upper"  { \clef "G" <<
                        \global
                        \sop
                        \alto
                >>}
                {
                
                }

                \context Staff = "lower"  { \clef "F"<<
                        \global
                        \tenor
                        \bass
                >>}
        >>
        
                
        
         }      
        
        \layout{
                indent = 0.0\pt
        }
        \markup{
  \wordwrap-string #"

1.  I WILL lift up mine | eyes un . to the | hills: *  O | whence -
cometh my | help?

2. My help cometh | even from the | LORD, * who | hath made heaven and | earth.

3. HE will not suffer thy | foot to be moved:  *  and he that |
keepeth thee will not | sleep.

4. Behold,| he that keep . eth | Israel  *  shall | neither slumber nor | sleep.

5. THE LORD him- | self is thy | keeper:  *  the LORD is thy de- |
fence upon thy right | hand;

6. So that the sun shall not | burn thee by | day,  *  nei- | ther the
moon by | night.

7. THE LORD shall pre - | serve thee from all | evil:  *  yea, it is
even | he that . shall keep thy | soul.

8. The LORD shall preserve thy going | out and thy coming | in,  *
from this time | forth for ever- | more."
        }
        
  \markup { \wordwrap-string #"

          Glory be to the | Father, and to the Son, * and | to the Holy Ghost;"
}

 \markup { \wordwrap-string #"
         As it was in the beginning, is | now, and ever | shall be, * world
without | end. A- | men."

        }       
        
  \midi {
   \context {
      \Score
      tempoWholesPerMinute = #(ly:make-moment 120 4)

    }





Also, I'm getting some warnings in the compile which I don't
understand.  Here is a paste of the output in the console from
LilyPondTool:

Processing `C:/Documents and Settings/Gord Gilbert/Desktop/LilyPond
Files/Psalm121.ly'
Parsing...
Interpreting music... [8]
Preprocessing graphical objects...
Finding the ideal number of pages...
Fitting music on 1 page...
Drawing systems...
Layout output to `Psalm121.ps'...
Converting to `./Psalm121.pdf'...
c:/Program Files/LilyPond/usr/share/lilypond/current/ly/init.ly:68:66:
error: syntax error, unexpected $end
   (ly:parser-error parser (_ "expected error, but none found"))))


error: failed files: "C:\\Documents and Settings\\Gord
Gilbert\\Desktop\\LilyPond Files\\Psalm121.ly"
Processing time: 18 seconds


Obviously, even though the log says it's a failed file, the compile
looks successful.  How can I get rid of these warnings?  Or are they
important?

Thanks as always for such an active and knowledgeable community.

Blessings,

Gordon+
-- 
Fr. Gordon Gilbert
Penetanguishene, ON

Psalm121.pdf
Description: Adobe PDF document