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Re: armadillo or lapack linking issue while making a new oot block in gn
|
From: |
Bob Proulx |
|
Subject: |
Re: armadillo or lapack linking issue while making a new oot block in gnu radio |
|
Date: |
Sun, 4 Mar 2018 12:04:23 -0700 |
|
User-agent: |
Mutt/1.9.3 (2018-01-21) |
Hello farhan,
You have contacted the mailing list adminstrators for the mailman
mailing lists at lists.gnu.org. However you seem to be talking about
something related to GNU Radio. That isn't us. We are not them. :-)
You might have better luck contacting one of the GNU Radio folks.
After looking for a bit I found this reference page for them.
https://wiki.gnuradio.org/index.php/Main_Page#Community_.26_Communicating
Bob
farhan ali wrote:
> i have installed libraries lapack,open blas,blas, arpack and mlpack.
>
> armadillo is working normally with mycode.cpp file and giving me the
> expexted output but when i put my code in gnu radio new block .cc file it
> gives errors, when i made a simple block using armadillo using simple
> functions like sum and generation of complex vectors in gnu radio, new
> block was made perfectly and is working. As in my actual code i am using
> some functions like solve which uses libs like lapack etc then it give
> these errors.
>
>
> make
> [ 8%] Built target gnuradio-cos
>
> [ 12%] Linking CXX executable test-cos
> CMakeFiles/test-cos.dir/first_impl.cc.o: In function
> gr::cos::first_impl::CoSaMP(arma::Col<std::complex<double>
> >, arma::Mat<std::complex<double> >, int, int,
> arma::Col<std::complex<double> >&)': first_impl.cc:(.text+0x2893):
> undefined reference tozgemv_'
> first_impl.cc:(.text+0x295d): undefined reference to zgemv_'
> first_impl.cc:(.text+0x2c18): undefined reference tozgbsv_'
> CMakeFiles/test-cos.dir/first_impl.cc.o: In function bool
> arma::auxlib::solve_square_refine<arma::Mat<std::complex<double> >
> >(arma::Mat<std::complex<arma::Mat<std::complex<double> >::pod_type> >&,
> arma::Mat<std::complex<double> >::pod_type&,
> arma::Mat<std::complex<arma::Mat<std::complex<double> >::pod_type> >&,
> arma::Base<std::complex<arma::Mat<std::complex<double> >::pod_type>,
> arma::Mat<std::complex<double> > > const&, bool)':
> first_impl.cc:(.text._ZN4arma6auxlib19solve_square_refineINS_3MatISt7complexIdEEEEEbRNS2_IS3_INT_8pod_typeEEEERS7_SA_RKNS_4BaseIS8_S6_EEb[_ZN4arma6auxlib19solve_square_refineINS_3MatISt7complexIdEEEEEbRNS2_IS3_INT_8pod_typeEEEERS7_SA_RKNS_4BaseIS8_S6_EEb]+0x427):
> undefined reference tozgesvx_'
> CMakeFiles/test-cos.dir/first_impl.cc.o: In function void
> arma::glue_times::apply<std::complex<double>, false, false, false,
> arma::Mat<std::complex<double> >, arma::Mat<std::complex<double> >
> >(arma::Mat<std::complex<double> >&, arma::Mat<std::complex<double> >
> const&, arma::Mat<std::complex<double> > const&, std::complex<double>)':
> first_impl.cc:(.text.hot._ZN4arma10glue_times5applyISt7complexIdELb0ELb0ELb0ENS_3MatIS3_EES5_EEvRNS4_IT_EERKT3_RKT4_S6_[_ZN4arma10glue_times5applyISt7complexIdELb0ELb0ELb0ENS_3MatIS3_EES5_EEvRNS4_IT_EERKT3_RKT4_S6_]+0x111):
> undefined reference tozgemm_'
> first_impl.cc:(.text.hot.
> *ZN4arma10glue_times5applyISt7complexIdELb0ELb0ELb0ENS_3MatIS3_EES5_EEvRNS4_IT_EERKT3_RKT4_S6*
> [
> *ZN4arma10glue_times5applyISt7complexIdELb0ELb0ELb0ENS_3MatIS3_EES5_EEvRNS4_IT_EERKT3_RKT4_S6*]+0x1f1):
> undefined reference to zgemv_' CMakeFiles/test-cos.dir/first_impl.cc.o: In
> functionbool arma::auxlib::solve_square_fast<arma::Mat<std::complex >
> >(arma::Mat<arma::Mat<std::complex >::elem_type>&,
> arma::Mat<arma::Mat<std::complex >::elem_type>&,
> arma::Base<arma::Mat<std::complex >::elem_type, arma::Mat<std::complex > >
> const&)':
> first_impl.cc:(.text._ZN4arma6auxlib17solve_square_fastINS_3MatISt7complexIdEEEEEbRNS2_INT_9elem_typeEEES9_RKNS_4BaseIS7_S6_EE[_ZN4arma6auxlib17solve_square_fastINS_3MatISt7complexIdEEEEEbRNS2_INT_9elem_typeEEES9_RKNS_4BaseIS7_S6_EE]+0x2a3):
> undefined reference to zgesv_' CMakeFiles/test-cos.dir/first_impl.cc.o: In
> functionbool arma::auxlib::solve_band_refine<arma::Mat<std::complex >
> >(arma::Mat<std::complex<arma::Mat<std::complex >::pod_type> >&,
> arma::Mat<std::complex >::pod_type&,
> arma::Mat<std::complex<arma::Mat<std::complex >::pod_type> >&, unsigned
> int, unsigned int, arma::Base<std::complex<arma::Mat<std::complex
> >::pod_type>, arma::Mat<std::complex > > const&, bool)':
> first_impl.cc:(.text._ZN4arma6auxlib17solve_band_refineINS_3MatISt7complexIdEEEEEbRNS2_IS3_INT_8pod_typeEEEERS7_SA_jjRKNS_4BaseIS8_S6_EEb[_ZN4arma6auxlib17solve_band_refineINS_3MatISt7complexIdEEEEEbRNS2_IS3_INT_8pod_typeEEEERS7_SA_jjRKNS_4BaseIS8_S6_EEb]+0x478):
> undefined reference to zgbsvx_' CMakeFiles/test-cos.dir/first_impl.cc.o: In
> functionbool arma::auxlib::solve_approx_fast<arma::Mat<std::complex >
> >(arma::Mat<arma::Mat<std::complex >::elem_type>&,
> arma::Mat<arma::Mat<std::complex >::elem_type>&,
> arma::Base<arma::Mat<std::complex >::elem_type, arma::Mat<std::complex > >
> const&)':
> first_impl.cc:(.text._ZN4arma6auxlib17solve_approx_fastINS_3MatISt7complexIdEEEEEbRNS2_INT_9elem_typeEEES9_RKNS_4BaseIS7_S6_EE[_ZN4arma6auxlib17solve_approx_fastINS_3MatISt7complexIdEEEEEbRNS2_INT_9elem_typeEEES9_RKNS_4BaseIS7_S6_EE]+0x388):
> undefined reference to zgels_' CMakeFiles/test-cos.dir/first_impl.cc.o: In
> functionbool arma::auxlib::solve_approx_svd<arma::Mat<std::complex >
> >(arma::Mat<std::complex<arma::Mat<std::complex >::pod_type> >&,
> arma::Mat<std::complex<arma::Mat<std::complex >::pod_type> >&,
> arma::Base<std::complex<arma::Mat<std::complex >::pod_type>,
> arma::Mat<std::complex > > const&)':
> first_impl.cc:(.text._ZN4arma6auxlib16solve_approx_svdINS_3MatISt7complexIdEEEEEbRNS2_IS3_INT_8pod_typeEEEESA_RKNS_4BaseIS8_S6_EE[*ZN4arma6auxlib16solve_approx_svdINS_3MatISt7complexIdEEEEEbRNS2_IS3_INT_8pod_typeEEEESA_RKNS_4BaseIS8_S6_EE]+0x317):
> undefined reference to ilaenv_'
> first_impl.cc:(.text._ZN4arma6auxlib16solve_approx_svdINS_3MatISt7complexIdEEEEEbRNS2_IS3_INT_8pod_typeEEEESA_RKNS_4BaseIS8_S6_EE[_ZN4arma6auxlib16solve_approx_svdINS_3MatISt7complexIdEEEEEbRNS2_IS3_INT_8pod_typeEEEESA_RKNS_4BaseIS8_S6_EE]+0x49c):
> undefined reference tozgelsd*'
> first_impl.cc:(.text._ZN4arma6auxlib16solve_approx_svdINS_3MatISt7complexIdEEEEEbRNS2_IS3_INT_8pod_typeEEEESA_RKNS_4BaseIS8_S6_EE[*ZN4arma6auxlib16solve_approx_svdINS_3MatISt7complexIdEEEEEbRNS2_IS3_INT_8pod_typeEEEESA_RKNS_4BaseIS8_S6_EE]+0x59a):
> undefined reference to `zgelsd*'
> collect2: error: ld returned 1 exit status
> lib/CMakeFiles/test-cos.dir/build.make:159: recipe for target
> 'lib/test-cos' failed
> make[2]: *** [lib/test-cos] Error 1
> CMakeFiles/Makefile2:174: recipe for target
> 'lib/CMakeFiles/test-cos.dir/all' failed
> make[1]: *** [lib/CMakeFiles/test-cos.dir/all] Error 2
> Makefile:140: recipe for target 'all' failed
> make: *** [all] Error 2
>
> i am trying from 2 days to resolve this issue,but still no success , kindly
> help me to resolve this linking issue.
> Thanks .
> # Copyright 2011,2012,2014 Free Software Foundation, Inc.
> #
> # This file is part of GNU Radio
> #
> # GNU Radio is free software; you can redistribute it and/or modify
> # it under the terms of the GNU General Public License as published by
> # the Free Software Foundation; either version 3, or (at your option)
> # any later version.
> #
> # GNU Radio is distributed in the hope that it will be useful,
> # but WITHOUT ANY WARRANTY; without even the implied warranty of
> # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
> # GNU General Public License for more details.
> #
> # You should have received a copy of the GNU General Public License
> # along with GNU Radio; see the file COPYING. If not, write to
> # the Free Software Foundation, Inc., 51 Franklin Street,
> # Boston, MA 02110-1301, USA.
>
> ########################################################################
> # Project setup
> ########################################################################
> cmake_minimum_required(VERSION 2.6)
> project(gr-cos CXX C)
> enable_language(Fortran)
> enable_language(CXX)
> enable_testing()
>
> #select the release build type by default to get optimization flags
> if(NOT CMAKE_BUILD_TYPE)
> set(CMAKE_BUILD_TYPE "Release")
> message(STATUS "Build type not specified: defaulting to release.")
> endif(NOT CMAKE_BUILD_TYPE)
> set(CMAKE_BUILD_TYPE ${CMAKE_BUILD_TYPE} CACHE STRING "")
>
> #make sure our local CMake Modules path comes first
> list(INSERT CMAKE_MODULE_PATH 0 ${CMAKE_SOURCE_DIR}/cmake/Modules)
>
> ########################################################################
> # Compiler specific setup
> ########################################################################
> if(CMAKE_COMPILER_IS_GNUCXX AND NOT WIN32)
> #http://gcc.gnu.org/wiki/Visibility
> add_definitions(-fvisibility=hidden)
> endif()
>
> ########################################################################
> # Find boost
> ########################################################################
> if(UNIX AND EXISTS "/usr/lib64")
> list(APPEND BOOST_LIBRARYDIR "/usr/lib64") #fedora 64-bit fix
> endif(UNIX AND EXISTS "/usr/lib64")
> set(Boost_ADDITIONAL_VERSIONS
> "1.35.0" "1.35" "1.36.0" "1.36" "1.37.0" "1.37" "1.38.0" "1.38" "1.39.0"
> "1.39"
> "1.40.0" "1.40" "1.41.0" "1.41" "1.42.0" "1.42" "1.43.0" "1.43" "1.44.0"
> "1.44"
> "1.45.0" "1.45" "1.46.0" "1.46" "1.47.0" "1.47" "1.48.0" "1.48" "1.49.0"
> "1.49"
> "1.50.0" "1.50" "1.51.0" "1.51" "1.52.0" "1.52" "1.53.0" "1.53" "1.54.0"
> "1.54"
> "1.55.0" "1.55" "1.56.0" "1.56" "1.57.0" "1.57" "1.58.0" "1.58" "1.59.0"
> "1.59"
> "1.60.0" "1.60" "1.61.0" "1.61" "1.62.0" "1.62" "1.63.0" "1.63" "1.64.0"
> "1.64"
> "1.65.0" "1.65" "1.66.0" "1.66" "1.67.0" "1.67" "1.68.0" "1.68" "1.69.0"
> "1.69"
> )
> find_package(Boost "1.35" COMPONENTS filesystem system)
>
> if(NOT Boost_FOUND)
> message(FATAL_ERROR "Boost required to compile cos")
> endif()
>
> ########################################################################
> # Install directories
> ########################################################################
> include(GrPlatform) #define LIB_SUFFIX
> set(GR_RUNTIME_DIR bin)
> set(GR_LIBRARY_DIR lib${LIB_SUFFIX})
> set(GR_INCLUDE_DIR include/cos)
> set(GR_DATA_DIR share)
> set(GR_PKG_DATA_DIR ${GR_DATA_DIR}/${CMAKE_PROJECT_NAME})
> set(GR_DOC_DIR ${GR_DATA_DIR}/doc)
> set(GR_PKG_DOC_DIR ${GR_DOC_DIR}/${CMAKE_PROJECT_NAME})
> set(GR_CONF_DIR etc)
> set(GR_PKG_CONF_DIR ${GR_CONF_DIR}/${CMAKE_PROJECT_NAME}/conf.d)
> set(GR_LIBEXEC_DIR libexec)
> set(GR_PKG_LIBEXEC_DIR ${GR_LIBEXEC_DIR}/${CMAKE_PROJECT_NAME})
> set(GRC_BLOCKS_DIR ${GR_PKG_DATA_DIR}/grc/blocks)
>
> ########################################################################
> # On Apple only, set install name and use rpath correctly, if not already set
> ########################################################################
> if(APPLE)
> if(NOT CMAKE_INSTALL_NAME_DIR)
> set(CMAKE_INSTALL_NAME_DIR
> ${CMAKE_INSTALL_PREFIX}/${GR_LIBRARY_DIR} CACHE
> PATH "Library Install Name Destination Directory" FORCE)
> endif(NOT CMAKE_INSTALL_NAME_DIR)
> if(NOT CMAKE_INSTALL_RPATH)
> set(CMAKE_INSTALL_RPATH
> ${CMAKE_INSTALL_PREFIX}/${GR_LIBRARY_DIR} CACHE
> PATH "Library Install RPath" FORCE)
> endif(NOT CMAKE_INSTALL_RPATH)
> if(NOT CMAKE_BUILD_WITH_INSTALL_RPATH)
> set(CMAKE_BUILD_WITH_INSTALL_RPATH ON CACHE
> BOOL "Do Build Using Library Install RPath" FORCE)
> endif(NOT CMAKE_BUILD_WITH_INSTALL_RPATH)
> endif(APPLE)
>
> ########################################################################
> # Find gnuradio build dependencies
> ########################################################################
> find_package(CppUnit)
> find_package(Doxygen)
>
> # Search for GNU Radio and its components and versions. Add any
> # components required to the list of GR_REQUIRED_COMPONENTS (in all
> # caps such as FILTER or FFT) and change the version to the minimum
> # API compatible version required.
> set(GR_REQUIRED_COMPONENTS RUNTIME FFT BLOCKS FILTER ARMADILLO)
> find_package(Gnuradio "3.7.2" REQUIRED)
>
>
>
>
>
>
>
> if(NOT CPPUNIT_FOUND)
> message(FATAL_ERROR "CppUnit required to compile cos")
> endif()
> ########################################################################
> # Find specest build dependencies
> ########################################################################
> find_package(BLAS REQUIRED)
> find_package(LAPACK REQUIRED)
> find_package(Armadillo REQUIRED)
> set(ARMADILLO_LIBRARIES
> "/usr/lib/libopenblas.so;/usr/lib/libarpack.so;/usr/lib/liblapack.so;/usr/local/lib/libmlpack.so;/usr/lib/gcc/x86_64-linux-gnu/5/libgfortran.so;/usr/lib/liblapack_atlas.so;/usr/lib/libf77blas.so;/usr/lib/libatlas.so")
> message(STATUS "Manually set Armadillo libraries to: ${ARMADILLO_LIBRARIES}")
> find_package(FFTW3f)
> include(Armadillo)
> IF (ARMADILLO_FOUND)
> MESSAGE("-- Found Armadillo, building MUSIC")
> ELSE(ARMADILLO_FOUND)
> MESSAGE("-- As armadillo wasn't found, the MUSIC algorithm will not be
> built")
> ENDIF(ARMADILLO_FOUND)
>
>
>
>
>
> ########################################################################
> # Setup doxygen option
> ########################################################################
> if(DOXYGEN_FOUND)
> option(ENABLE_DOXYGEN "Build docs using Doxygen" ON)
> else(DOXYGEN_FOUND)
> option(ENABLE_DOXYGEN "Build docs using Doxygen" OFF)
> endif(DOXYGEN_FOUND)
>
>
>
>
>
>
>
>
>
> ########################################################################
> # Setup the include and linker paths
> ########################################################################
> include_directories(
> ${CMAKE_SOURCE_DIR}/lib
> ${CMAKE_SOURCE_DIR}/include
> ${CMAKE_BINARY_DIR}/lib
> ${CMAKE_BINARY_DIR}/include
> ${Boost_INCLUDE_DIRS}
> ${CPPUNIT_INCLUDE_DIRS}
> ${GNURADIO_ALL_INCLUDE_DIRS}
> )
>
> link_directories(
> ${Boost_LIBRARY_DIRS}
> ${CPPUNIT_LIBRARY_DIRS}
> ${GNURADIO_RUNTIME_LIBRARY_DIRS}
> )
>
> # Set component parameters
> set(GR_COS_INCLUDE_DIRS ${CMAKE_CURRENT_SOURCE_DIR}/include CACHE INTERNAL ""
> FORCE)
> set(GR_COS_SWIG_INCLUDE_DIRS ${CMAKE_CURRENT_SOURCE_DIR}/swig CACHE INTERNAL
> "" FORCE)
>
> ########################################################################
> # Create uninstall target
> ########################################################################
> configure_file(
> ${CMAKE_SOURCE_DIR}/cmake/cmake_uninstall.cmake.in
> ${CMAKE_CURRENT_BINARY_DIR}/cmake_uninstall.cmake
> @ONLY)
>
> add_custom_target(uninstall
> ${CMAKE_COMMAND} -P ${CMAKE_CURRENT_BINARY_DIR}/cmake_uninstall.cmake
> )
>
> ########################################################################
> # Add subdirectories
> ########################################################################
> add_subdirectory(include/cos)
> add_subdirectory(lib)
> add_subdirectory(swig)
> add_subdirectory(python)
> add_subdirectory(grc)
> add_subdirectory(apps)
> add_subdirectory(docs)
>
> ########################################################################
> # Install cmake search helper for this library
> ########################################################################
> if(NOT CMAKE_MODULES_DIR)
> set(CMAKE_MODULES_DIR lib${LIB_SUFFIX}/cmake)
> endif(NOT CMAKE_MODULES_DIR)
>
> install(FILES cmake/Modules/cosConfig.cmake
> DESTINATION ${CMAKE_MODULES_DIR}/cos
> )