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[Octave-bug-tracker] [bug #39491] Change H5Giterate to H5Literate
From: |
anonymous |
Subject: |
[Octave-bug-tracker] [bug #39491] Change H5Giterate to H5Literate |
Date: |
Mon, 15 Jul 2013 20:33:19 +0000 |
User-agent: |
Mozilla/5.0 (X11; Linux i686) AppleWebKit/537.36 (KHTML, like Gecko) Ubuntu Chromium/28.0.1500.52 Chrome/28.0.1500.52 Safari/537.36 |
URL:
<http://savannah.gnu.org/bugs/?39491>
Summary: Change H5Giterate to H5Literate
Project: GNU Octave
Submitted by: None
Submitted on: Mon 15 Jul 2013 20:33:18 UTC
Category: Octave Function
Severity: 3 - Normal
Priority: 5 - Normal
Item Group: Incorrect Result
Status: None
Assigned to: None
Originator Name: dspyz
Originator Email: address@hidden
Open/Closed: Open
Discussion Lock: Any
Release: dev
Operating System: GNU/Linux
_______________________________________________________
Details:
I'm trying to use octave to read a .h5 file using
load finalProg.h5
The file was built with another application using hdf5 1.8.4, but octave fails
to read it because H5Giterate is deprecated as of hdf5 1.8
I emailed the HDF Group and they said to use H5Literate instead.
I get the following error message when I try to read the file:
error: load: error while reading hdf5 item all
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 2963904320:
#000: ../../../src/H5Gdeprec.c line 777 in H5Giterate(): group iteration
failed
major: Symbol table
minor: Iteration failed
#001: ../../../src/H5G.c line 1532 in H5G_iterate(): error iterating over
links
major: Symbol table
minor: Iteration failed
#002: ../../../src/H5Gobj.c line 599 in H5G_obj_iterate(): can't iterate
over symbol table
major: Symbol table
minor: Iteration failed
#003: ../../../src/H5Gstab.c line 522 in H5G_stab_iterate(): iteration
operator failed
major: Symbol table
minor: Can't move to next iterator location
#004: ../../../src/H5B.c line 1302 in H5B_iterate(): B-tree iteration
failed
major: B-Tree node
minor: Iteration failed
#005: ../../../src/H5B.c line 1225 in H5B_iterate_helper(): iterator
function failed
major: B-Tree node
minor: Unable to list node
#006: ../../../src/H5Gnode.c line 1021 in H5G_node_iterate(): iteration
operator failed
major: Symbol table
minor: Can't move to next iterator location
error: load: error while reading hdf5 item events
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 2963904320:
#000: ../../../src/H5Gdeprec.c line 777 in H5Giterate(): group iteration
failed
major: Symbol table
minor: Iteration failed
#001: ../../../src/H5G.c line 1532 in H5G_iterate(): error iterating over
links
major: Symbol table
minor: Iteration failed
#002: ../../../src/H5Gobj.c line 599 in H5G_obj_iterate(): can't iterate
over symbol table
major: Symbol table
minor: Iteration failed
#003: ../../../src/H5Gstab.c line 522 in H5G_stab_iterate(): iteration
operator failed
major: Symbol table
minor: Can't move to next iterator location
#004: ../../../src/H5B.c line 1302 in H5B_iterate(): B-tree iteration
failed
major: B-Tree node
minor: Iteration failed
#005: ../../../src/H5B.c line 1225 in H5B_iterate_helper(): iterator
function failed
major: B-Tree node
minor: Unable to list node
#006: ../../../src/H5Gnode.c line 1021 in H5G_node_iterate(): iteration
operator failed
major: Symbol table
minor: Can't move to next iterator location
#007: ../../../src/H5Gdeprec.c line 777 in H5Giterate(): group iteration
failed
major: Symbol table
minor: Iteration failed
#008: ../../../src/H5G.c line 1532 in H5G_iterate(): error iterating over
links
major: Symbol table
minor: Iteration failed
#009: ../../../src/H5Gobj.c line 599 in H5G_obj_iterate(): can't iterate
over symbol table
major: Symbol table
minor: Iteration failed
#010: ../../../src/H5Gstab.c line 522 in H5G_stab_iterate(): iteration
operator failed
major: Symbol table
minor: Can't move to next iterator location
#011: ../../../src/H5B.c line 1302 in H5B_iterate(): B-tree iteration
failed
major: B-Tree node
minor: Iteration failed
#012: ../../../src/H5B.c line 1225 in H5B_iterate_helper(): iterator
function failed
major: B-Tree node
minor: Unable to list node
#013: ../../../src/H5Gnode.c line 1021 in H5G_node_iterate(): iteration
operator failed
major: Symbol table
minor: Can't move to next iterator location
_______________________________________________________
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<http://savannah.gnu.org/bugs/?39491>
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- [Octave-bug-tracker] [bug #39491] Change H5Giterate to H5Literate,
anonymous <=