R: segfault on exit after changeset : "clean up top-level variables.."

[Marco Atzeri]

--- Gio 24/12/09, Riccardo Corradini ha scritto:

> I
> think this related to an update to the external libraries
> linked to dev octave.
> I had the same problems yesterday on ubuntu 9.10, but when
> I updated  the whole set of libraries with apt-get
> update I restarted compilation and everything went fine.
> Hope this helps
> Respectfully
> Riccardo

Not the case here, the fault is repetitive.
I built various changesets until I found the one from which
I have the problem. The previous one worked fine.

Regards
Marco


> 
> --- Mer 23/12/09, Marco Atzeri
> <address@hidden> ha scritto:
> 
> Da: Marco Atzeri <address@hidden>
> Oggetto: segfault on exit after changeset : "clean up
> top-level variables.."
> A: address@hidden
> Data: Mercoledì 23 dicembre 2009, 14:13
> 
> Hi Jaroslav,
> after your 
>  
> changeset 9981    692ab4eaf965
> "clean up top-level variables when exiting
>  Octave"
> 
> octave is segfaulting on exit on cygwin1-7.
> The changeset seems related to fltk and currently 
> I am building without it, so could you check it ?
> 
> Regards
> Marco
> 
> ../octave/configure --libexecdir=/usr/lib
> --without-framework-opengl F77=gfortran-4 CXX=g++-4
> CPP=cpp-4 CC=gcc-4 LDFLAGS=-no-undefined FLIBS=-lgfortran
> lt_cv_deplibs_check_method=pass_all
> 
> Octave is now configured for i686-pc-cygwin
> 
>   Source directory:         
>   ../octave
>   Installation prefix:     
>    /usr/local
>   C compiler:           
>       gcc-4  -mieee-fp  -Wall -W
> -Wshadow -Wformat -g -O2
>   C++ compiler:         
>       g++-4  -mieee-fp
> -I/usr/include/freetype2    -Wall -W -Wshadow
> -Wold-style-cast -Wformat -g -O2
>   Fortran
>  compiler:           
> gfortran-4 -O -mieee-fp
>   Fortran libraries:       
>    -lgfortran
>   Glob libraries:
>   Lex libraries:
>   LIBS:           
>             -lwsock32
> -lm   -lwsock32
> 
>   AMD CPPFLAGS:
>   AMD LDFLAGS:
>   AMD libraries:         
>      -lamd
>   ARPACK libraries:         
>   -larpack
>   BLAS libraries:         
>     -lblas
>   CAMD CPPFLAGS:
>   CAMD LDFLAGS:
>   CAMD libraries:         
>     -lcamd
>   CARBON libraries:
>   CCOLAMD CPPFLAGS:
>   CCOLAMD LDFLAGS:
>   CCOLAMD libraries:       
>    -lccolamd
>   CHOLMOD
>  CPPFLAGS:
>   CHOLMOD LDFLAGS:
>   CHOLMOD libraries:       
>    -lcholmod
>   COLAMD CPPFLAGS:
>   COLAMD LDFLAGS:
>   COLAMD libraries:         
>   -lcolamd
>   CURL CPPFLAGS:
>   CURL LDFLAGS:
>   CURL libraries:         
>     -lcurl
>   CXSPARSE CPPFLAGS:
>   CXSPARSE LDFLAGS:
>   CXSPARSE libraries:       
>   -lcxsparse
>   DL libraries:
>   FFTW3 CPPFLAGS:
>   FFTW3 LDFLAGS:
>   FFTW3 libraries:         
>    -lfftw3
>   FFTW3F CPPFLAGS:
>   FFTW3F LDFLAGS:
>   FFTW3F libraries:         
>   -lfftw3f
>   fontconfig CFLAGS:
>   fontconfig LIBS:         
>    -lfontconfig -lexpat -lfreetype -lz
>  -liconv
>   FT2_CFLAGS:           
>       -I/usr/include/freetype2
>   FT2_LIBS:           
>         -lfreetype -lz
>   GLPK CPPFLAGS:
>   GLPK LDFLAGS:
>   GLPK libraries:         
>     -lglpk
>   graphics CFLAGS:
>   graphics LIBS:
>   GraphicsMagick++
> CPPFLAGS:   -I/usr/include/GraphicsMagick
>   GraphicsMagick++ LDFLAGS:
>   GraphicsMagick++ libraries:  -lGraphicsMagick++
> -lGraphicsMagick
>   HDF5 CPPFLAGS:
>   HDF5 LDFLAGS:
>   HDF5 libraries:         
>     -lhdf5
>   LAPACK libraries:         
>   -llapack
>   OPENGL libraries:         
>   -lfontconfig -lexpat -lfreetype -lz
> -liconv   -L/usr/X11R6/lib -lGL
>  -lGLU
>   PTHREAD flags:
>   PTHREAD libraries:
>   QHULL CPPFLAGS:
>   QHULL LDFLAGS:
>   QHULL libraries:         
>    -lqhull
>   QRUPDATE libraries:       
>   -lqrupdate
>   READLINE libraries:       
>   -lreadline
>   REGEX libraries:         
>    -L/usr/lib -lpcre
>   TERM libraries:         
>     -lncurses
>   TERM libraries:         
>     -lncurses
>   UMFPACK libraries:       
>    -lumfpack
>   X11 include flags:
>   X11 libraries:         
>      -lX11
>   Z CPPFLAGS:
>   Z LDFLAGS:
>   Z libraries:         
>        -lz
> 
>  
>  Default pager:           
>    less
>   gnuplot:           
>          gnuplot
> 
>   Do internal array bounds checking:  false
>   Build static libraries:       
>      false
>   Build shared libraries:       
>      true
>   Dynamic Linking:         
>           true (dlopen)
>   Include support for GNU
> readline:   true
>   64-bit array dims and indexing: 
>    false
> 
> configure:39848: WARNING: "FLTK config script not
> found.  Native graphics will be disabled."
> configure:39864: WARNING:
> configure:39866: WARNING: I didn't find the necessary
> libraries to compile native
> configure:39868: WARNING: graphics. It isn't necessary
> to have
>  native graphics
> configure:39870: WARNING: but you will have to use gnuplot
> or you won't be able
> configure:39872: WARNING: to use any of Octave's
> plotting commands
> configure:39874: WARNING:
> 
> 
> 
> Regards
> Marco
> 
> 
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