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Re: MXE Octave: "... has no symbols" warning under Mac OS X
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From: |
Ben Abbott |
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Subject: |
Re: MXE Octave: "... has no symbols" warning under Mac OS X |
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Date: |
Wed, 25 Sep 2013 09:18:48 -0400 |
On Sep 25, 2013, at 5:10 AM, Anirudha Bose wrote:
> On Wed, Sep 25, 2013 at 3:22 AM, Ben Abbott <address@hidden> wrote:
> On Sep 24, 2013, at 4:35 PM, Anirudha Bose wrote:
>
> > On Wed, Sep 25, 2013 at 1:56 AM, Anirudha Bose <address@hidden> wrote:
> >
> > On Wed, Sep 25, 2013 at 1:32 AM, Ben Abbott <address@hidden> wrote:
> > On Sep 24, 2013, at 11:41 AM, Ben Abbott wrote:
> >
> > > On Sep 24, 2013, at 2:59 AM, Anirudha Bose wrote:
> > >
> > >> If you send me the entire log of octave then I can understand better. I
> > >> am not getting any such errors while building octave.
> > >
> > > I started by build with a "sudo make clean" and then ...
> > >
> > > $ autoconf
> > > $ ./configure --enable-native-build --enable-shared --disable-static \
> > > --target=darwin --build=darwin --host=darwin \
> > > --enable-pic-flag
> > > checking for gawk... gawk
> > > checking for grep that handles long lines and -e... /opt/local/bin/grep
> > > checking whether ln -s works... yes
> > > checking for a thread-safe mkdir -p... /opt/local/bin/gmkdir -p
> > > checking for a BSD-compatible install... /opt/local/bin/ginstall -c
> > > checking for darwin-gcc... no
> > > checking for gcc... gcc
> > > checking whether the C compiler works... yes
> > > checking for C compiler default output file name... a.out
> > > checking for suffix of executables...
> > > checking whether we are cross compiling... no
> > > checking for suffix of object files... o
> > > checking whether we are using the GNU C compiler... yes
> > > checking whether gcc accepts -g... yes
> > > checking for gcc option to accept ISO C89... none needed
> > > checking how to run the C preprocessor... gcc -E
> > > checking for egrep... /opt/local/bin/grep -E
> > > checking whether gcc needs -traditional... no
> > > darwin
> > > configure: creating ./config.status
> > > config.status: creating Makefile
> > > config.status: creating tools/set_mxe_env.sh
> > > $ sudo make octave
> > > [check requirements]
> > > [build] build-autoconf
> > > [done] build-autoconf
> > > [build] build-automake
> > > [done] build-automake
> > > [build] build-bison
> > > [done] build-bison
> > > [build] build-cmake
> > > [done] build-cmake
> > > [build] build-flex
> > > [done] build-flex
> > > [build] build-gperf
> > > [done] build-gperf
> > > [build] build-libtool
> > > [done] build-libtool
> > > [build] build-pkg-config
> > > [done] build-pkg-config
> > > [build] build-texinfo
> > > [done] build-texinfo
> > > # create the CMake toolchain file
> > > [ -d
> > > '/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/share/cmake/'
> > > ] || mkdir -p
> > > '/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/share/cmake/'
> > > (if [ darwin = mingw ]; then echo 'set(CMAKE_SYSTEM_NAME Windows)'; echo
> > > 'set(MSYS 1)'; fi; if [ darwin = msvc ]; then echo 'set(MSVC 1)'; fi; if
> > > [ yes = yes ]; then echo 'set(BUILD_SHARED_LIBS ON)'; else echo
> > > 'set(BUILD_SHARED_LIBS OFF)'; fi; if [ no = yes ]; then echo
> > > 'set(BUILD_STATIC_LIBS ON)'; else echo 'set(BUILD_STATIC_LIBS OFF)'; fi;
> > > echo 'set(CMAKE_BUILD_TYPE Release)'; if [ darwin = msvc ]; then echo
> > > 'set(CMAKE_FIND_ROOT_PATH )'; echo 'set(CMAKE_FIND_ROOT_PATH_MODE_PROGRAM
> > > BOTH)'; else echo 'set(CMAKE_FIND_ROOT_PATH
> > > /Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2)';
> > > echo 'set(CMAKE_FIND_ROOT_PATH_MODE_PROGRAM NEVER)'; fi; echo
> > > 'set(CMAKE_FIND_ROOT_PATH_MODE_INCLUDE ONLY)'; echo
> > > 'set(CMAKE_FIND_ROOT_PATH_MODE_LIBRARY ONLY)'; echo 'set(CMAKE_C_COMPILER
> > > gcc)'; echo 'set(CMAKE_CXX_COMPILER g++)'; echo
> > > 'set(CMAKE_Fortran_COMPILER /opt/local/bin/gfortran-mp-4.7)'; echo
> > > 'set(CMAKE_RC_COMPILER true)'; echo 'set(PKG_CONFIG_EXECUTABLE
> > > pkg-config)'; echo 'set(QT_QMAKE_EXECUTABLE qmake)'; if [ darwin = msvc
> > > ]; then echo 'set(CMAKE_INSTALL_PREFIX CACHE PATH "Installation
> > > Prefix")'; else echo 'set(CMAKE_INSTALL_PREFIX
> > > /Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2
> > > CACHE PATH "Installation Prefix")'; fi; echo 'set(CMAKE_BUILD_TYPE
> > > Release CACHE STRING "Debug|Release|RelWithDebInfo|MinSizeRel")') >
> > > '/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/share/cmake/mxe-conf.cmake'
> > > touch cmake-toolchain-file.stamp
> > > [build] blas
> > > [done] blas
> > > [build] lapack
> > > [done] lapack
> > > [build] arpack
> > > [done] arpack
> > > [build] gmp
> > > [done] gmp
> > > [build] nettle
> > > [done] nettle
> > > [build] zlib
> > > [done] zlib
> > > [build] gnutls
> > > [done] gnutls
> > > [build] libiconv
> > > [done] libiconv
> > > [build] gettext
> > > [done] gettext
> > > [build] libidn
> > > [done] libidn
> > > [build] libgpg_error
> > > [done] libgpg_error
> > > [build] libgcrypt
> > > [done] libgcrypt
> > > [build] libssh2
> > > [done] libssh2
> > > [build] curl
> > > [done] curl
> > > [build] fftw
> > > [done] fftw
> > > [build] jpeg
> > > [done] jpeg
> > > [build] libpng
> > > [done] libpng
> > > [done] pthreads
> > > [build] freetype
> > > [done] freetype
> > > [build] fltk
> > > [done] fltk
> > > [build] expat
> > > [done] expat
> > > [build] fontconfig
> > > [done] fontconfig
> > > [build] glpk
> > > [done] glpk
> > > [build] gnuplot
> > > [done] gnuplot
> > > [build] bzip2
> > > [done] bzip2
> > > [build] jasper
> > > [done] jasper
> > > [build] xz
> > > [done] xz
> > > [build] tiff
> > > [done] tiff
> > > [build] lcms
> > > [done] lcms
> > > [build] libxml2
> > > [done] libxml2
> > > [build] libtool
> > > [done] libtool
> > > [build] graphicsmagick
> > > [done] graphicsmagick
> > > [build] hdf5
> > > [done] hdf5
> > > [build] pcre
> > > [done] pcre
> > > [build] pstoedit
> > > [done] pstoedit
> > > [build] qhull
> > > [done] qhull
> > > [build] qrupdate
> > > [done] qrupdate
> > > [build] openssl
> > > [done] openssl
> > > [build] lcms1
> > > [done] lcms1
> > > [build] libmng
> > > [done] libmng
> > > [build] dbus
> > > [done] dbus
> > > [build] qt
> > > [done] qt
> > > [build] qscintilla
> > > [done] qscintilla
> > > [build] ncurses
> > > [done] ncurses
> > > [build] readline
> > > [done] readline
> > > [build] suitesparse
> > > [done] suitesparse
> > > [build] texinfo
> > > [done] texinfo
> > > [build] octave
> > >
> > > Failed to build package octave!
> > > ------------------------------------------------------------
> > > collect2: ld returned 1 exit status
> > > make[5]: *** [dldfcn/__magick_read__.la] Error 1
> > > make[4]: *** [install] Error 2
> > > make[3]: *** [install-recursive] Error 1
> > > make[2]: *** [install] Error 2
> > > make[1]: *** [build-only-octave] Error 2
> > > real 36m42.443s
> > > user 26m19.358s
> > > sys 2m45.182s
> > > ------------------------------------------------------------
> > > [log]
> > > /Users/bpabbott/Development/mercurial/mxe-octave-anirudha/log/octave
> > >
> > >
> > > The log is attached.
> > >
> > > Ben
> > >
> > > <octave.log>
> >
> > I noticed that the GraphicsMagick's libraries built using MXE are all
> > static. My Macports build includes static libraries. Is that where the
> > problem lies?
> >
> > GraphicsMagick won't compile as shared library. A separate Makefile has
> > been provided to build shared libraries on UNIX platforms. It didn't work
> > for me. I have used --build=i386 which necessarily compiles the package as
> > static. It works fine for me.
> >
> > One difference I see in your logs while comparing with mine is that you
> > have X included in your build. I don't think that will be required on
> > Mountain Lion. AFAIK Octave requires an X Server on Snow Leopard only. Can
> > you try building octave with --without-x option? You need to make the
> > change in src/octave.mk specific to Darwin system. I don't have access to
> > my Mac, so I can't help you right you.
> >
> > Also, if you see the src/graphicsmagick.mk file you will find that it is
> > compiled without X (--without-x), whereas your build is looking for X11
> > libraries.
> >
> > I am not sure if --without-x will be recognized while building Octave. You
> > can try two things here: Either uninstall X from your Macports directory,
> > or compile GraphicsMagick with X (other packages in which X has been
> > disabled might also need this change).
> >
> > - Anirudha
>
> I modified octave.mk and added "--without-x" to configure. Unfortunately, I
> get the same error.
>
> Did you try uninstalling X from MacPorts? Make sure the X11 CPPFLAGS and
> LDFLAGS do not get included while building Octave.
>
> - Anirudha
Unintalling X isn't an option for me. However, I did verify that Octave's
configure script correctly interpreted "--without-x".
Octave is now configured for x86_64-apple-darwin11.4.2
Source directory:
/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/tmp-octave/octave-3.7.5
Installation prefix:
/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2
C compiler: gcc -Wall -W -Wshadow -Wformat -Wpointer-arith
-Wmissing-prototypes -Wstrict-prototypes -Wwrite-strings -Wcast-align
-Wcast-qual -g -O2 -D_THREAD_SAFE -pthread
C++ compiler: g++
-I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include
-I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include/freetype2
-I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include
-I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include
-Wall -W -Wshadow -Wold-style-cast -Wformat -Wpointer-arith -Wwrite-strings
-Wcast-align -Wcast-qual -g -O2 -D_THREAD_SAFE -pthread
Fortran compiler: /opt/local/bin/gfortran-mp-4.7 -ff2c -O
Fortran libraries:
-L/opt/local/lib/gcc47/gcc/x86_64-apple-darwin11/4.7.3
-L/opt/local/lib/gcc47/gcc/x86_64-apple-darwin11/4.7.3/../../..
-L/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/lib
-lgfortran -lquadmath -lm
Lex libraries:
LIBS: -lm
AMD CPPFLAGS:
AMD LDFLAGS:
AMD libraries: -lamd
ARPACK CPPFLAGS:
ARPACK LDFLAGS:
ARPACK libraries:
BLAS libraries: -framework vecLib
CAMD CPPFLAGS:
CAMD LDFLAGS:
CAMD libraries: -lcamd
CARBON libraries: -Wl,-framework -Wl,Carbon
CCOLAMD CPPFLAGS:
CCOLAMD LDFLAGS:
CCOLAMD libraries: -lccolamd
CHOLMOD CPPFLAGS:
CHOLMOD LDFLAGS:
CHOLMOD libraries: -lcholmod
COLAMD CPPFLAGS:
COLAMD LDFLAGS:
COLAMD libraries: -lcolamd
CURL CPPFLAGS:
CURL LDFLAGS:
CURL libraries: -lcurl
CXSPARSE CPPFLAGS:
CXSPARSE LDFLAGS:
CXSPARSE libraries: -lcxsparse
DL libraries: -ldl
FFTW3 CPPFLAGS:
FFTW3 LDFLAGS:
FFTW3 libraries: -lfftw3_threads -lfftw3
FFTW3F CPPFLAGS:
FFTW3F LDFLAGS:
FFTW3F libraries: -lfftw3f_threads -lfftw3f
fontconfig CFLAGS:
-I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include
fontconfig libraries:
-L/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/lib
-lfontconfig
FreeType2 CFLAGS:
-I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include/freetype2
-I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include
FreeType2 libraries:
-L/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/lib
-lfreetype
GLPK CPPFLAGS:
GLPK LDFLAGS:
GLPK libraries: -lglpk
graphics CFLAGS:
-I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT
graphics libraries:
-L/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/lib
-lfltk_gl -framework AGL -framework OpenGL -framework ApplicationServices
-lfltk -lpthread -framework Cocoa
HDF5 CPPFLAGS:
HDF5 LDFLAGS:
HDF5 libraries: -lhdf5
Java home:
/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home
Java JVM path:
/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Libraries
Java CPPFLAGS:
-I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/include
-I/System/Library/Frameworks/JavaVM.framework/Home/include
-I/System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Headers
-I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers
Java libraries: -framework JavaVM
LAPACK libraries:
LLVM CPPFLAGS:
LLVM LDFLAGS:
LLVM libraries:
Magick++ CPPFLAGS:
-I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include/GraphicsMagick
-I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include/libxml2
-I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include
Magick++ LDFLAGS:
-L/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/lib
Magick++ libraries: -lGraphicsMagick++ -lGraphicsMagick
OPENGL libraries:
-L/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/lib
-lfontconfig -Wl,-framework -Wl,OpenGL
PTHREAD flags: -D_THREAD_SAFE -pthread
PTHREAD libraries:
QHULL CPPFLAGS:
QHULL LDFLAGS:
QHULL libraries: -lqhull
QRUPDATE CPPFLAGS:
QRUPDATE LDFLAGS:
QRUPDATE libraries: -lqrupdate
Qt CPPFLAGS:
Qt LDFLAGS:
Qt libraries:
READLINE libraries: -lreadline
REGEX libraries:
-L/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/lib
-lpcre
TERM libraries: -lncurses
UMFPACK CPPFLAGS:
UMFPACK LDFLAGS:
UMFPACK libraries: -lumfpack
X11 include flags:
X11 libraries:
Z CPPFLAGS:
Z LDFLAGS:
Z libraries: -lz
Default pager: less
gnuplot: gnuplot
Build Octave GUI: no
JIT compiler for loops: no
Build Java interface: yes
Do internal array bounds checking: no
Use octave_allocator: no
Build static libraries: no
Build shared libraries: yes
Dynamic Linking: yes (dlopen)
Include support for GNU readline: yes
64-bit array dims and indexing: no
configure: WARNING: ARPACK library found, but does not seem to work properly --
disabling eigs function
configure:
configure: NOTE: Libraries or auxiliary programs may be skipped if they are
configure: NOTE: not found OR if they are missing required features on your
configure: NOTE: system.
Ben
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, (continued)
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Anirudha Bose, 2013/09/23
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Ben Abbott, 2013/09/23
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Anirudha Bose, 2013/09/23
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Anirudha Bose, 2013/09/24
- Message not available
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Ben Abbott, 2013/09/24
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Ben Abbott, 2013/09/24
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Anirudha Bose, 2013/09/24
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Anirudha Bose, 2013/09/24
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Ben Abbott, 2013/09/24
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Anirudha Bose, 2013/09/25
- Re: MXE Octave: "... has no symbols" warning under Mac OS X,
Ben Abbott <=
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Ben Abbott, 2013/09/25
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Ben Abbott, 2013/09/24
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, John W. Eaton, 2013/09/23
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Anirudha Bose, 2013/09/23
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, John W. Eaton, 2013/09/23
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Anirudha Bose, 2013/09/23
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Anirudha Bose, 2013/09/23
- Re: MXE Octave: "... has no symbols" warning under Mac OS X, Michael Goffioul, 2013/09/23
Re: MXE Octave: "... has no symbols" warning under Mac OS X, Michael Goffioul, 2013/09/10