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Re: MXE Octave: "... has no symbols" warning under Mac OS X

From: Ben Abbott
Subject: Re: MXE Octave: "... has no symbols" warning under Mac OS X
Date: Wed, 25 Sep 2013 21:01:39 -0400 
On Sep 25, 2013, at 9:18 AM, Ben Abbott wrote:

> On Sep 25, 2013, at 5:10 AM, Anirudha Bose wrote:
> 
>> On Wed, Sep 25, 2013 at 3:22 AM, Ben Abbott <address@hidden> wrote:
>> On Sep 24, 2013, at 4:35 PM, Anirudha Bose wrote:
>> 
>>> On Wed, Sep 25, 2013 at 1:56 AM, Anirudha Bose <address@hidden> wrote:
>>> 
>>> On Wed, Sep 25, 2013 at 1:32 AM, Ben Abbott <address@hidden> wrote:
>>> On Sep 24, 2013, at 11:41 AM, Ben Abbott wrote:
>>> 
>>>> On Sep 24, 2013, at 2:59 AM, Anirudha Bose wrote:
>>>> 
>>>>> If you send me the entire log of octave then I can understand better. I 
>>>>> am not getting any such errors while building octave.
>>>> 
>>>> I started by build with a "sudo make clean" and then ...
>>>> 
>>>> $ autoconf
>>>> $ ./configure --enable-native-build --enable-shared --disable-static \
>>>>           --target=darwin --build=darwin --host=darwin \
>>>>           --enable-pic-flag
>>>> checking for gawk... gawk
>>>> checking for grep that handles long lines and -e... /opt/local/bin/grep
>>>> checking whether ln -s works... yes
>>>> checking for a thread-safe mkdir -p... /opt/local/bin/gmkdir -p
>>>> checking for a BSD-compatible install... /opt/local/bin/ginstall -c
>>>> checking for darwin-gcc... no
>>>> checking for gcc... gcc
>>>> checking whether the C compiler works... yes
>>>> checking for C compiler default output file name... a.out
>>>> checking for suffix of executables...
>>>> checking whether we are cross compiling... no
>>>> checking for suffix of object files... o
>>>> checking whether we are using the GNU C compiler... yes
>>>> checking whether gcc accepts -g... yes
>>>> checking for gcc option to accept ISO C89... none needed
>>>> checking how to run the C preprocessor... gcc -E
>>>> checking for egrep... /opt/local/bin/grep -E
>>>> checking whether gcc needs -traditional... no
>>>> darwin
>>>> configure: creating ./config.status
>>>> config.status: creating Makefile
>>>> config.status: creating tools/set_mxe_env.sh
>>>> $ sudo make octave
>>>> [check requirements]
>>>> [build]    build-autoconf
>>>> [done]     build-autoconf
>>>> [build]    build-automake
>>>> [done]     build-automake
>>>> [build]    build-bison
>>>> [done]     build-bison
>>>> [build]    build-cmake
>>>> [done]     build-cmake
>>>> [build]    build-flex
>>>> [done]     build-flex
>>>> [build]    build-gperf
>>>> [done]     build-gperf
>>>> [build]    build-libtool
>>>> [done]     build-libtool
>>>> [build]    build-pkg-config
>>>> [done]     build-pkg-config
>>>> [build]    build-texinfo
>>>> [done]     build-texinfo
>>>> # create the CMake toolchain file
>>>> [ -d 
>>>> '/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/share/cmake/'
>>>>  ] || mkdir -p 
>>>> '/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/share/cmake/'
>>>> (if [ darwin = mingw ]; then echo 'set(CMAKE_SYSTEM_NAME Windows)'; echo 
>>>> 'set(MSYS 1)'; fi; if [ darwin = msvc ]; then echo 'set(MSVC 1)'; fi; if [ 
>>>> yes = yes ]; then echo 'set(BUILD_SHARED_LIBS ON)'; else echo 
>>>> 'set(BUILD_SHARED_LIBS OFF)'; fi; if [ no = yes ]; then echo 
>>>> 'set(BUILD_STATIC_LIBS ON)'; else echo 'set(BUILD_STATIC_LIBS OFF)'; fi; 
>>>> echo 'set(CMAKE_BUILD_TYPE Release)'; if [ darwin = msvc ]; then echo 
>>>> 'set(CMAKE_FIND_ROOT_PATH )'; echo 'set(CMAKE_FIND_ROOT_PATH_MODE_PROGRAM 
>>>> BOTH)'; else echo 'set(CMAKE_FIND_ROOT_PATH 
>>>> /Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2)';
>>>>  echo 'set(CMAKE_FIND_ROOT_PATH_MODE_PROGRAM NEVER)'; fi; echo 
>>>> 'set(CMAKE_FIND_ROOT_PATH_MODE_INCLUDE ONLY)'; echo 
>>>> 'set(CMAKE_FIND_ROOT_PATH_MODE_LIBRARY ONLY)'; echo 'set(CMAKE_C_COMPILER 
>>>> gcc)'; echo 'set(CMAKE_CXX_COMPILER g++)'; echo 
>>>> 'set(CMAKE_Fortran_COMPILER /opt/local/bin/gfortran-mp-4.7)'; echo 
>>>> 'set(CMAKE_RC_COMPILER true)'; echo 'set(PKG_CONFIG_EXECUTABLE 
>>>> pkg-config)'; echo 'set(QT_QMAKE_EXECUTABLE qmake)'; if [ darwin = msvc ]; 
>>>> then echo 'set(CMAKE_INSTALL_PREFIX  CACHE PATH "Installation Prefix")'; 
>>>> else echo 'set(CMAKE_INSTALL_PREFIX 
>>>> /Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2
>>>>  CACHE PATH "Installation Prefix")'; fi; echo 'set(CMAKE_BUILD_TYPE 
>>>> Release CACHE STRING "Debug|Release|RelWithDebInfo|MinSizeRel")') > 
>>>> '/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/share/cmake/mxe-conf.cmake'
>>>> touch cmake-toolchain-file.stamp
>>>> [build]    blas
>>>> [done]     blas
>>>> [build]    lapack
>>>> [done]     lapack
>>>> [build]    arpack
>>>> [done]     arpack
>>>> [build]    gmp
>>>> [done]     gmp
>>>> [build]    nettle
>>>> [done]     nettle
>>>> [build]    zlib
>>>> [done]     zlib
>>>> [build]    gnutls
>>>> [done]     gnutls
>>>> [build]    libiconv
>>>> [done]     libiconv
>>>> [build]    gettext
>>>> [done]     gettext
>>>> [build]    libidn
>>>> [done]     libidn
>>>> [build]    libgpg_error
>>>> [done]     libgpg_error
>>>> [build]    libgcrypt
>>>> [done]     libgcrypt
>>>> [build]    libssh2
>>>> [done]     libssh2
>>>> [build]    curl
>>>> [done]     curl
>>>> [build]    fftw
>>>> [done]     fftw
>>>> [build]    jpeg
>>>> [done]     jpeg
>>>> [build]    libpng
>>>> [done]     libpng
>>>> [done]     pthreads
>>>> [build]    freetype
>>>> [done]     freetype
>>>> [build]    fltk
>>>> [done]     fltk
>>>> [build]    expat
>>>> [done]     expat
>>>> [build]    fontconfig
>>>> [done]     fontconfig
>>>> [build]    glpk
>>>> [done]     glpk
>>>> [build]    gnuplot
>>>> [done]     gnuplot
>>>> [build]    bzip2
>>>> [done]     bzip2
>>>> [build]    jasper
>>>> [done]     jasper
>>>> [build]    xz
>>>> [done]     xz
>>>> [build]    tiff
>>>> [done]     tiff
>>>> [build]    lcms
>>>> [done]     lcms
>>>> [build]    libxml2
>>>> [done]     libxml2
>>>> [build]    libtool
>>>> [done]     libtool
>>>> [build]    graphicsmagick
>>>> [done]     graphicsmagick
>>>> [build]    hdf5
>>>> [done]     hdf5
>>>> [build]    pcre
>>>> [done]     pcre
>>>> [build]    pstoedit
>>>> [done]     pstoedit
>>>> [build]    qhull
>>>> [done]     qhull
>>>> [build]    qrupdate
>>>> [done]     qrupdate
>>>> [build]    openssl
>>>> [done]     openssl
>>>> [build]    lcms1
>>>> [done]     lcms1
>>>> [build]    libmng
>>>> [done]     libmng
>>>> [build]    dbus
>>>> [done]     dbus
>>>> [build]    qt
>>>> [done]     qt
>>>> [build]    qscintilla
>>>> [done]     qscintilla
>>>> [build]    ncurses
>>>> [done]     ncurses
>>>> [build]    readline
>>>> [done]     readline
>>>> [build]    suitesparse
>>>> [done]     suitesparse
>>>> [build]    texinfo
>>>> [done]     texinfo
>>>> [build]    octave
>>>> 
>>>> Failed to build package octave!
>>>> ------------------------------------------------------------
>>>> collect2: ld returned 1 exit status
>>>> make[5]: *** [dldfcn/__magick_read__.la] Error 1
>>>> make[4]: *** [install] Error 2
>>>> make[3]: *** [install-recursive] Error 1
>>>> make[2]: *** [install] Error 2
>>>> make[1]: *** [build-only-octave] Error 2
>>>> real  36m42.443s
>>>> user  26m19.358s
>>>> sys   2m45.182s
>>>> ------------------------------------------------------------
>>>> [log]      
>>>> /Users/bpabbott/Development/mercurial/mxe-octave-anirudha/log/octave
>>>> 
>>>> 
>>>> The log is attached.
>>>> 
>>>> Ben
>>>> 
>>>> <octave.log>
>>> 
>>> I noticed that the GraphicsMagick's libraries built using MXE are all 
>>> static. My Macports build includes static libraries.  Is that where the 
>>> problem lies?
>>> 
>>> GraphicsMagick won't compile as shared library. A separate Makefile has 
>>> been provided to build shared libraries on UNIX platforms. It didn't work 
>>> for me. I have used --build=i386 which necessarily compiles the package as 
>>> static. It works fine for me.
>>> 
>>> One difference I see in your logs while comparing with mine is that you 
>>> have X included in your build. I don't think that will be required on 
>>> Mountain Lion. AFAIK Octave requires an X Server on Snow Leopard only. Can 
>>> you try building octave with --without-x option? You need to make the 
>>> change in src/octave.mk specific to Darwin system. I don't have access to 
>>> my Mac, so I can't help you right you.
>>> 
>>> Also, if you see the src/graphicsmagick.mk file you will find that it is 
>>> compiled without X (--without-x), whereas your build is looking for X11 
>>> libraries.
>>> 
>>> I am not sure if --without-x will be recognized while building Octave. You 
>>> can try two things here: Either uninstall X from your Macports directory, 
>>> or compile GraphicsMagick with X (other packages in which X has been 
>>> disabled might also need this change).
>>> 
>>> - Anirudha
>> 
>> I modified octave.mk and added "--without-x" to configure.  Unfortunately, I 
>> get the same error.
>> 
>> Did you try uninstalling X from MacPorts? Make sure the X11 CPPFLAGS and 
>> LDFLAGS do not get included while building Octave.
>> 
>> - Anirudha
> 
> Unintalling X isn't an option for me.  However, I did verify that Octave's 
> configure script correctly interpreted "--without-x".
> 
> Octave is now configured for x86_64-apple-darwin11.4.2
> 
>  Source directory:            
> /Users/bpabbott/Development/mercurial/mxe-octave-anirudha/tmp-octave/octave-3.7.5
>  Installation prefix:         
> /Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2
>  C compiler:                  gcc   -Wall -W -Wshadow -Wformat 
> -Wpointer-arith -Wmissing-prototypes -Wstrict-prototypes -Wwrite-strings 
> -Wcast-align -Wcast-qual -g -O2 -D_THREAD_SAFE -pthread
>  C++ compiler:                g++  
> -I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include
>  
> -I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include/freetype2
>  
> -I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include
>   
> -I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include
>    -Wall -W -Wshadow -Wold-style-cast -Wformat -Wpointer-arith 
> -Wwrite-strings -Wcast-align -Wcast-qual -g -O2 -D_THREAD_SAFE -pthread
>  Fortran compiler:            /opt/local/bin/gfortran-mp-4.7 -ff2c -O
>  Fortran libraries:            
> -L/opt/local/lib/gcc47/gcc/x86_64-apple-darwin11/4.7.3 
> -L/opt/local/lib/gcc47/gcc/x86_64-apple-darwin11/4.7.3/../../.. 
> -L/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/lib
>  -lgfortran -lquadmath -lm
>  Lex libraries:               
>  LIBS:                        -lm  
> 
>  AMD CPPFLAGS:                
>  AMD LDFLAGS:                 
>  AMD libraries:               -lamd
>  ARPACK CPPFLAGS:             
>  ARPACK LDFLAGS:              
>  ARPACK libraries:            
>  BLAS libraries:              -framework vecLib
>  CAMD CPPFLAGS:               
>  CAMD LDFLAGS:                
>  CAMD libraries:              -lcamd
>  CARBON libraries:            -Wl,-framework -Wl,Carbon
>  CCOLAMD CPPFLAGS:            
>  CCOLAMD LDFLAGS:             
>  CCOLAMD libraries:           -lccolamd
>  CHOLMOD CPPFLAGS:            
>  CHOLMOD LDFLAGS:             
>  CHOLMOD libraries:           -lcholmod
>  COLAMD CPPFLAGS:             
>  COLAMD LDFLAGS:              
>  COLAMD libraries:            -lcolamd
>  CURL CPPFLAGS:               
>  CURL LDFLAGS:                
>  CURL libraries:              -lcurl
>  CXSPARSE CPPFLAGS:           
>  CXSPARSE LDFLAGS:            
>  CXSPARSE libraries:          -lcxsparse
>  DL libraries:                -ldl
>  FFTW3 CPPFLAGS:              
>  FFTW3 LDFLAGS:               
>  FFTW3 libraries:             -lfftw3_threads -lfftw3
>  FFTW3F CPPFLAGS:             
>  FFTW3F LDFLAGS:              
>  FFTW3F libraries:            -lfftw3f_threads -lfftw3f
>  fontconfig CFLAGS:           
> -I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include
>  
>  fontconfig libraries:        
> -L/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/lib
>  -lfontconfig 
>  FreeType2 CFLAGS:            
> -I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include/freetype2
>  
> -I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include
>  
>  FreeType2 libraries:         
> -L/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/lib
>  -lfreetype 
>  GLPK CPPFLAGS:               
>  GLPK LDFLAGS:                
>  GLPK libraries:              -lglpk
>  graphics CFLAGS:             
> -I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include
>  -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT
>  graphics libraries:          
> -L/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/lib
>  -lfltk_gl -framework AGL -framework OpenGL -framework ApplicationServices 
> -lfltk -lpthread -framework Cocoa
>  HDF5 CPPFLAGS:               
>  HDF5 LDFLAGS:                
>  HDF5 libraries:              -lhdf5
>  Java home:                   
> /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home
>  Java JVM path:               
> /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Libraries
>  Java CPPFLAGS:               
> -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/include 
> -I/System/Library/Frameworks/JavaVM.framework/Home/include 
> -I/System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Headers 
> -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers
>  Java libraries:              -framework JavaVM
>  LAPACK libraries:            
>  LLVM CPPFLAGS:               
>  LLVM LDFLAGS:                
>  LLVM libraries:              
>  Magick++ CPPFLAGS:           
> -I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include/GraphicsMagick
>  
> -I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include/libxml2
>  
> -I/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/include
>  
>  Magick++ LDFLAGS:            
> -L/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/lib
>  
>  Magick++ libraries:          -lGraphicsMagick++ -lGraphicsMagick 
>  OPENGL libraries:            
> -L/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/lib
>  -lfontconfig  -Wl,-framework -Wl,OpenGL
>  PTHREAD flags:               -D_THREAD_SAFE -pthread
>  PTHREAD libraries:           
>  QHULL CPPFLAGS:              
>  QHULL LDFLAGS:               
>  QHULL libraries:             -lqhull
>  QRUPDATE CPPFLAGS:           
>  QRUPDATE LDFLAGS:            
>  QRUPDATE libraries:          -lqrupdate
>  Qt CPPFLAGS:                 
>  Qt LDFLAGS:                  
>  Qt libraries:                
>  READLINE libraries:          -lreadline
>  REGEX libraries:             
> -L/Users/bpabbott/Development/mercurial/mxe-octave-anirudha/usr/x86_64-apple-darwin11.4.2/lib
>  -lpcre
>  TERM libraries:              -lncurses
>  UMFPACK CPPFLAGS:            
>  UMFPACK LDFLAGS:             
>  UMFPACK libraries:           -lumfpack
>  X11 include flags:           
>  X11 libraries:               
>  Z CPPFLAGS:                  
>  Z LDFLAGS:                   
>  Z libraries:                 -lz
> 
>  Default pager:               less
>  gnuplot:                     gnuplot
> 
>  Build Octave GUI:                   no
>  JIT compiler for loops:             no
>  Build Java interface:               yes
>  Do internal array bounds checking:  no
>  Use octave_allocator:               no
>  Build static libraries:             no
>  Build shared libraries:             yes
>  Dynamic Linking:                    yes (dlopen)
>  Include support for GNU readline:   yes
>  64-bit array dims and indexing:     no
> 
> configure: WARNING: ARPACK library found, but does not seem to work properly 
> -- disabling eigs function
> configure: 
> configure: NOTE: Libraries or auxiliary programs may be skipped if they are
> configure: NOTE: not found OR if they are missing required features on your
> configure: NOTE: system. 
> 
> Ben

I also tried building GraphicsMagick without the "---without-x" configure 
option, and encountered the same error as before.

Ben
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