Re: Octave 4.2.0 release candidate 1 available for ftp

[Sebastian]

> Am 09.09.2016 um 13:14 schrieb ben Abbott <address@hidden>:
>> On Sep 9, 2016, at 6:36 AM, c. <address@hidden> wrote:
>> On 9 Sep 2016, at 01:21, John W. Eaton <address@hidden> wrote:
>> 
>>> The first release candidate for Octave 4.2.0 is available from
>>> 
>>> ftp://alpha.gnu.org/gnu/octave
>>> 
>>> There may be some problems that need to be fixed so it is unlikely that 
>>> this version will become the 4.2.0 release without some changes but I hope 
>>> to not have more than two or three release candidates before the 4.2.0 
>>> release is final.
>>> 
>>> Please try to build this version and report any problems you find in the 
>>> bug tracker.  I've added a new version tag for the release candidate, so 
>>> please use that when reporting problems.
>> 
>> Hi,
>> 
>> I have been trying to build the release candidate on the development mac 
>> machine at EPFL, using homebrew for dependencies. 
>> 
>> My configure options are as follows:
>> 
>> ---------------------------------------------------------------
>> #!/bin/bash
>> version=4.2rc1-clang-703.0.31-gfortran-6
>> ../octave-4.2.0-rc1/configure                                       \
>>   SED=/usr/local/bin/gsed                               \
>>   PATH=/usr/local/opt/bison/bin:/usr/local/opt/flex/bin:${PATH}              
>>                                          \
>>   CC=clang                                              \
>>   CFLAGS="-pipe -O2 -m64"                               \
>>   CPPFLAGS="-D_THREAD_SAFE -I/usr/local/include 
>> -I/usr/local/opt/readline/include -I/usr/local/opt/flex/include"      \
>>   LDFLAGS="-L/usr/local/lib -L/usr/local/opt/readline/lib 
>> -L/usr/local/opt/bison/lib -L/usr/local/opt/flex/lib -m64 " \
>>   CXX=clang++                                           \
>>   CXXFLAGS="-pipe -O2 -m64"                             \
>>   F77=gfortran-6                                        \
>>   FFLAGS="-pipe -O2 -m64"                               \
>>   --with-lapack="-L/opt/openblas/2.19-clang-703.0.31-gfortran-6 -lopenblas" \
>>   --with-blas="-L/opt/openblas/2.19-clang-703.0.31-gfortran-6-lopenblas"    \
>>   --prefix=/opt/octave/${version}                       \
>>   --disable-jit                                         \
>>   --disable-java                                        \
>>   --with-framework-carbon                               \
>>   --with-arpack                                         \
>>   --enable-docs                                         \
>>   --without-opengl                                      \
>>   --without-x                                           \
>>   --without-OSMesa                                      \
>>   --without-qt                                          \
>>   --disable-gui                                         \
>>   --without-fltk                                        \
>>   --enable-link-all-dependencies 
>> ---------------------------------------------------------------
>> 
>> The build fails with the following error:
>> 
>> ---------------------------------------------------------------
>> libtool: link: clang++ -std=gnu++11 -dynamiclib  -o 
>> liboctave/.libs/liboctave.4.dylib  
>> liboctave/.libs/liboctave_liboctave_la-liboctave-build-info.o   
>> -Wl,-force_load,liboctave/array/.libs/libarray.a 
>> -Wl,-force_load,liboctave/cruft/ranlib/.libs/libranlib.a 
>> -Wl,-force_load,liboctave/cruft/.libs/libcruft.a 
>> -Wl,-force_load,liboctave/numeric/.libs/libnumeric.a 
>> -Wl,-force_load,liboctave/operators/.libs/liboperators.a 
>> -Wl,-force_load,liboctave/system/.libs/libsystem.a 
>> -Wl,-force_load,liboctave/util/.libs/libutil.a 
>> -Wl,-force_load,liboctave/wrappers/.libs/libwrappers.a 
>> -Wl,-force_load,libgnu/.libs/libgnu.a  
>> -L/usr/local/Cellar/arpack/3.4.0/libexec/lib 
>> -L/usr/local/Cellar/fftw/3.3.5/lib -L/usr/local/lib 
>> -L/usr/local/opt/readline/lib -L/usr/local/opt/bison/lib 
>> -L/usr/local/opt/flex/lib -lcurl -lcholmod -lumfpack -lamd -lcamd -lcolamd 
>> -lccolamd -lcxsparse 
>> /usr/local/Cellar/arpack/3.4.0/libexec/lib/libarpack.dylib 
>> -L/usr/local/opt/veclibfort/lib -lqrupdate -lfftw3_threads -lfftw3 
>> -lfftw3f_threads -lfftw3f -llapack -lblas -lreadline -lncurses 
>> -L/usr/local/Cellar/pcre/8.39/lib -lpcre -ldl 
>> -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0 
>> -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../..
>>  -lgfortran -lquadmath -lm  -pthread -O2 -m64 -m64   -pthread -install_name  
>> /opt/octave/4.2rc1-clang-703.0.31-gfortran-6/lib/octave/4.2.0-rc1/liboctave.4.dylib
>>  -compatibility_version 5 -current_version 5.0 -Wl,-single_module
>> clang: warning: argument unused during compilation: '-pthread'
>> clang: warning: argument unused during compilation: '-pthread'
>> Undefined symbols for architecture x86_64:
>> "_SuiteSparse_config", referenced from:
>>     SparseComplexMatrix::fsolve(MatrixType&, Matrix const&, int&, double&, 
>> void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-CSparse.o)
>>     SparseComplexMatrix::fsolve(MatrixType&, SparseMatrix const&, int&, 
>> double&, void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-CSparse.o)
>>     SparseComplexMatrix::fsolve(MatrixType&, ComplexMatrix const&, int&, 
>> double&, void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-CSparse.o)
>>     SparseComplexMatrix::fsolve(MatrixType&, SparseComplexMatrix const&, 
>> int&, double&, void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-CSparse.o)
>>     SparseMatrix::fsolve(MatrixType&, Matrix const&, int&, double&, void 
>> (*)(double), bool) const in libarray.a(liboctave_array_libarray_la-dSparse.o)
>>     SparseMatrix::fsolve(MatrixType&, SparseMatrix const&, int&, double&, 
>> void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-dSparse.o)
>>     SparseMatrix::fsolve(MatrixType&, ComplexMatrix const&, int&, double&, 
>> void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-dSparse.o)
>>     ...
>> "_SuiteSparse_divcomplex", referenced from:
>>     SparseComplexMatrix::fsolve(MatrixType&, Matrix const&, int&, double&, 
>> void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-CSparse.o)
>>     SparseComplexMatrix::fsolve(MatrixType&, SparseMatrix const&, int&, 
>> double&, void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-CSparse.o)
>>     SparseComplexMatrix::fsolve(MatrixType&, ComplexMatrix const&, int&, 
>> double&, void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-CSparse.o)
>>     SparseComplexMatrix::fsolve(MatrixType&, SparseComplexMatrix const&, 
>> int&, double&, void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-CSparse.o)
>>     SparseMatrix::fsolve(MatrixType&, Matrix const&, int&, double&, void 
>> (*)(double), bool) const in libarray.a(liboctave_array_libarray_la-dSparse.o)
>>     SparseMatrix::fsolve(MatrixType&, SparseMatrix const&, int&, double&, 
>> void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-dSparse.o)
>>     SparseMatrix::fsolve(MatrixType&, ComplexMatrix const&, int&, double&, 
>> void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-dSparse.o)
>>     ...
>> "_SuiteSparse_hypot", referenced from:
>>     SparseComplexMatrix::fsolve(MatrixType&, Matrix const&, int&, double&, 
>> void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-CSparse.o)
>>     SparseComplexMatrix::fsolve(MatrixType&, SparseMatrix const&, int&, 
>> double&, void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-CSparse.o)
>>     SparseComplexMatrix::fsolve(MatrixType&, ComplexMatrix const&, int&, 
>> double&, void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-CSparse.o)
>>     SparseComplexMatrix::fsolve(MatrixType&, SparseComplexMatrix const&, 
>> int&, double&, void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-CSparse.o)
>>     SparseMatrix::fsolve(MatrixType&, Matrix const&, int&, double&, void 
>> (*)(double), bool) const in libarray.a(liboctave_array_libarray_la-dSparse.o)
>>     SparseMatrix::fsolve(MatrixType&, SparseMatrix const&, int&, double&, 
>> void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-dSparse.o)
>>     SparseMatrix::fsolve(MatrixType&, ComplexMatrix const&, int&, double&, 
>> void (*)(double), bool) const in 
>> libarray.a(liboctave_array_libarray_la-dSparse.o)
>>     ...
>> ld: symbol(s) not found for architecture x86_64
>> clang: error: linker command failed with exit code 1 (use -v to see 
>> invocation)
>> make[2]: *** [liboctave/liboctave.la] Error 1
>> make[1]: *** [all-recursive] Error 1
>> make: *** [all] Error 2
>> mathicsepc32:octave_release_build carlo$ 
>> ---------------------------------------------------------------
>> 
>> This is my first attempt at building with clang since a very long time so 
>> I'd appreciate 
>> comments from those who are more used to it.
>> 
>> The suitesparse installation and detection look ok to me, I can provide the 
>> config.log output if you like,
>> or you can also access the same machine and try the build yourself if needed.
>> 
>> c.
> 
> The configure below builds the default branch using Fink. Perhaps it will be 
> useful for debugging Homebrew?
> 
> export LDFLAGS="-v -Wl,-dead_strip_dylibs"
> export LIBS="-lm -lgl2ps"
> export F77="/sw/bin/gfortran-fsf-5"
> export FFLAGS="-O3"
> export FLIBS="-L${FLIBDIR} -lgfortran"
> export PKG_CONFIG="/sw/bin/pykg-config"
> export PKG_CONFIG_PATH="/sw/lib/qt4-${qt_type}/lib/pkgconfig:$PKG_CONFIG_PATH"
> export PATH="/sw/lib/qt4-${qt_type}/bin:$PATH"
> export LDFLAGS=`pkg-config QtNetwork --libs`" "`pkg-config QtGui --libs`" 
> -L/sw/lib/qt4-${qt_type}/lib $LDFLAGS"
> export LDFLAGS="$LDFLAGS -L/sw/lib -framework JavaVM"
> export JAVA_HOME=$(/usr/libexec/java_home)
> export CPPFLAGS="-I/sw/include/mesa $CPPFLAGS"
> ../sources/configure --prefix=$PREFIX \
>            --with-lapack=-ltatlas \
>            --with-blas=-ltatlas \
>            --with-magick=GraphicsMagick \
>            --with-qhull-includedir=$FINK_PREFIX/include/libqhull \
>            --host=$HOSTTYPE-apple-darwin \
>            --build=$HOSTTYPE-apple-darwin \
>            --infodir=$FINK_PREFIX/share/info \
>            --mandir=$FINK_PREFIX/share/man \
>            --enable-shared \
>            --enable-dl \
>            --enable-docs \
>            --disable-static \
>            --with-opengl \
>            --with-framework-carbon \
>            --without-x \
>            --enable-dependency-tracking \
>            --enable-link-all-dependencies \
>            --without-OSMesa 
> 
> Ben

I will try to compile it tonight and let you guys know.

@Ben: you compile with clang, right? Can you please try to install the latest 
odepkg with 4.2.0? There is something fishy with Fortran and we are not sure 
who is guilty (mac, octave core, clang, odepkg, ...), see

http://octave.1599824.n4.nabble.com/Fortran-libraries-in-odepkg-Octave-4-1-0-td4679570.html

Thanks,
Sebastian