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From: | V A Ramesh |
Subject: | No Such File or Directory Error |
Date: | Mon, 05 May 2014 08:34:06 +0530 |
User-agent: | Mozilla/5.0 (X11; Linux x86_64; rv:24.0) Gecko/20100101 Thunderbird/24.2.0 |
Dear all, Version: GNU parallel 20140222, OS: CentOS 6.3; I was trying to run the following command, parallel -j5 {} < Test.in and the Test.in Contains /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.0625 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.0625.out /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.125 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.125.out /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.25 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.25.out /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.5 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.5.out /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 1 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_1.out All of these commands are valid commands and works perfectly if executed as serial jobs in a script. The error I was getting is, /bin/bash: /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.0625 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.0625.out : No such file or directory /bin/bash: /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.125 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.125.out : No such file or directory /bin/bash: /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.25 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.25.out : No such file or directory /bin/bash: /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.5 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.5.out : No such file or directory /bin/bash: /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 1 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_1.out : No such file or directory All the files are present and /home/varamesh/Softwares/libsvm-3.18/svm-train is a valid Executable file. I had also tried giving path of the input file like "/home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.0625 -v 10 /home/varamesh/Work/Model_Building/Combined_Full.scaled >& ./Combined_Full.scaled_0.03125_0.0625.out" as input, Even this gave me the same Error. Please help me to solve the issue. Thanks in advance. -- Vakkalagadda A Ramesh Jr. Research Fellow Lab of Computational Biology Centre for DNA Fingerprinting and Diagnostics (CDFD) Nampally Hyderabad-500001 Lab: 040-24749368 Mobile: 08686363632 |
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