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No Such File or Directory Error


From: V A Ramesh
Subject: No Such File or Directory Error
Date: Mon, 05 May 2014 08:34:06 +0530
User-agent: Mozilla/5.0 (X11; Linux x86_64; rv:24.0) Gecko/20100101 Thunderbird/24.2.0

Dear all,


Version: GNU parallel 20140222,
OS: CentOS 6.3;

I was trying to run the following command,

parallel -j5 {} < Test.in

and the Test.in Contains

/home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.0625 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.0625.out         
/home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.125 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.125.out         
/home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.25 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.25.out         
/home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.5 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.5.out         
/home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 1 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_1.out


All of these commands are valid commands and works perfectly if executed as serial jobs in  a script.

The error I was getting is,

/bin/bash: /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.0625 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.0625.out : No such file or directory
/bin/bash: /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.125 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.125.out : No such file or directory
/bin/bash: /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.25 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.25.out : No such file or directory
/bin/bash: /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.5 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_0.5.out : No such file or directory
/bin/bash: /home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 1 -v 10 Combined_Full.scaled >& Combined_Full.scaled_0.03125_1.out : No such file or directory


All the files are present and  /home/varamesh/Softwares/libsvm-3.18/svm-train is a valid Executable file. I had also tried giving path of the input file like

 "/home/varamesh/Softwares/libsvm-3.18/svm-train -c 0.03125 -g 0.0625 -v 10 /home/varamesh/Work/Model_Building/Combined_Full.scaled >& ./Combined_Full.scaled_0.03125_0.0625.out" as input, Even this gave me the same Error. Please help me to solve  the issue.

Thanks in advance.
-- 
Vakkalagadda A Ramesh
Jr. Research Fellow
Lab of Computational Biology
Centre for DNA Fingerprinting and Diagnostics (CDFD)
Nampally
Hyderabad-500001
Lab: 040-24749368
Mobile: 08686363632

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