Re: parallel + blast + LSF

[Martin d'Anjou]

On 15-04-15 09:34 AM, Giuseppe Aprea wrote:
> Hi all,
>
> I would like to ask you, please, some help in using parallel with 
> blast alignment software.
>
>
> I am trying to use GNU parallel v. 20150122 with blast for a very 
> large sequences alignment. I am using Parallel on a cluster which uses 
> LSF as queue system.

Hello Giuseppe,

I am an avid LSF user, and I want to use GNU Parallel to dispatch jobs 
to LSF. Could you please explain a little bit to me how GNU Parallel 
works with LSF? I do not see it in the on-line tutorials. For example, I 
would like to understand how to pass "bsub" options like -oo, -q 
queue_name, etc. to LSF from GNU Parallel.

Thanks,
Martin