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[Swarm-Support] [bug #4261] Core dump with R-1.7.1 and add-on package hd
From: |
nobody |
Subject: |
[Swarm-Support] [bug #4261] Core dump with R-1.7.1 and add-on package hdf5-1.4.7 |
Date: |
Fri, 18 Jul 2003 02:59:56 -0400 |
User-agent: |
Mozilla/5.0 (X11; U; Linux i686) Gecko/20030314 Galeon/1.3.4 |
=================== BUG #4261: LATEST MODIFICATIONS ==================
http://savannah.nongnu.org/bugs/?func=detailbug&bug_id=4261&group_id=1837
Changes by: Alex Lancaster <address@hidden>
Date: Thu 07/17/2003 at 23:59 (US/Pacific)
What | Removed | Added
---------------------------------------------------------------------------
Category | None | Swarm
Severity | 5 - Major | 4
------------------ Additional Follow-up Comments ----------------------------
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=================== BUG #4261: FULL BUG SNAPSHOT ===================
Submitted by: eiji Project: Swarm
Submitted on: Wed 07/09/2003 at 19:33
Category: Swarm Severity: 4
Bug Group: None Resolution: None
Assigned to: None Status: Open
Summary: Core dump with R-1.7.1 and add-on package hdf5-1.4.7
Original Submission: I tried to load a HDF5 file generated by Swarm-2.1.1
(snapshot 2.1.145.20030623) in R version 1.7.1 using the function hdf5load of
the package hdf5-1.4.7. It 'core dumps' with the following error message:
R.bin: H5T.c:5729: H5T_set_size: Assertion `"not implemented yet" && 0' failed.
I have the current latest snapshopt of HDF5 (HDF5-1.4.5-post2) in my linux
machine. I'm using gcc-3.0.1.
I have attempted to load the same HDF5 test-file in an old machine which has
R-1.2.2 and it could load the file without problems (I'll try to upload the
test file in savannah as a reference).
For those having the same problem and looking for an alternative while this bug
is not solved, there is an alternative package to process HDF5 files in R ->
http://www.bioconductor.org/repository/release1.1/package/html/rhdf5.html I
could use making some adaptations in my R scripts.
Follow-up Comments
*******************
-------------------------------------------------------
Date: Thu 07/17/2003 at 23:59 By: alexl
This is a check to see if the posting of followups to e-mail address is working
properly.
CC list is empty
File Attachments
****************
-------------------------------------------------------
Date: Wed 07/09/2003 at 19:33 Name: ts3n0.hdf Size: 234KB By: eiji
A HDF5 test file
http://savannah.nongnu.org/bugs/download.php?group_id=1837&bug_id=4261&bug_file_id=522
For detailed info, follow this link:
http://savannah.nongnu.org/bugs/?func=detailbug&bug_id=4261&group_id=1837
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