bug#36800: closed ([PATCH 11/11] gnu: Add r-depecher.)

[GNU bug Tracking System]

Your message dated Fri, 21 Feb 2020 18:07:33 +0100
with message-id <CAJ3okZ2GnkOKAPNwz8FwmRbZ+W+pYHiwB=address@hidden>
and subject line patches merged
has caused the debbugs.gnu.org bug report #36797,
regarding [PATCH 11/11] gnu: Add r-depecher.
to be marked as done.

(If you believe you have received this mail in error, please contact
address@hidden.)


-- 
36797: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797
GNU Bug Tracking System
Contact address@hidden with problems
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 11/11] gnu: Add r-depecher.
>
>
>
>
> Date: 
>
> Wed, 24 Jul 2019 20:22:04 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-depecher): New variable.
> ---
>  gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++
>  1 file changed, 44 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 64625aedd4..7c9a3b7417 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -5013,3 +5013,47 @@ data sets: N-integration with variants of Generalised 
> Canonical Correlation
>  Analysis and P-integration with variants of multi-group Partial Least
>  Squares.")
>      (license license:gpl2+)))
> +
> +(define-public r-depecher
> +  (package
> +    (name "r-depecher")
> +    (version "1.0.3")
> +    (source
> +      (origin
> +        (method url-fetch)
> +        (uri (bioconductor-uri "DepecheR" version))
> +        (sha256
> +          (base32
> +            "0qj2h2a50fncppvi2phh0mbivxkn1mv702mqpi9mvvkf3bzq8m0h"))))
> +    (properties `((upstream-name . "DepecheR")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +      `(("r-beanplot" ,r-beanplot)
> +        ("r-biocparallel" ,r-biocparallel)
> +        ("r-dosnow" ,r-dosnow)
> +        ("r-dplyr" ,r-dplyr)
> +        ("r-foreach" ,r-foreach)
> +        ("r-ggplot2" ,r-ggplot2)
> +        ("r-gplots" ,r-gplots)
> +        ("r-mass" ,r-mass)
> +        ("r-matrixstats" ,r-matrixstats)
> +        ("r-mixomics" ,r-mixomics)
> +        ("r-moments" ,r-moments)
> +        ("r-rcpp" ,r-rcpp)
> +        ("r-rcppeigen" ,r-rcppeigen)
> +        ("r-reshape2" ,r-reshape2)
> +        ("r-viridis" ,r-viridis)))
> +    (home-page
> +      "https://bioconductor.org/packages/DepecheR";)
> +    (synopsis
> +      "Determination of essential phenotypic elements of clusters in 
> high-dimensional entities")
> +    (description
> +     "The purpose of this package is to identify traits in a dataset that can
> +separate groups.  This is done on two levels.  First, clustering is performed,
> +using an implementation of sparse K-means.  Secondly, the generated clusters
> +are used to predict outcomes of groups of individuals based on their
> +distribution of observations in the different clusters.  As certain clusters
> +with separating information will be identified, and these clusters are defined
> +by a sparse number of variables, this method can reduce the complexity of
> +data, to only emphasize the data that actually matters.")
> +    (license license:expat)))
> -- 
> 2.21.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> patches merged
>
>
>
>
> Date: 
>
> Fri, 21 Feb 2020 18:07:33 +0100
>
>
>
>
> Dear,
>
> All the patches are merged now; except r-flowpeaks. Because this
> package use Artistic1.0 which is not enough clear to be considered
> "free" [1,2] (GNU's point of view [3]) and upstream are not
> responsive, let clean the bug tracker. :-)
>
> [1] https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797#16
> [2] https://lists.gnu.org/archive/html/guix-devel/2019-12/msg00286.html
> [3] https://www.gnu.org/licenses/license-list.en.html#ArtisticLicense
>
> All the best,
> simon
>
>
> --- End Message ---