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bug#54635: closed ([PATCH 0/5] Add wfmash)


From: GNU bug Tracking System
Subject: bug#54635: closed ([PATCH 0/5] Add wfmash)
Date: Thu, 31 Mar 2022 13:33:03 +0000

Your message dated Thu, 31 Mar 2022 16:31:28 +0300
with message-id <YkWtMAFXeRTuXVfQ@3900XT>
and subject line Re: [PATCH v2 5/5] gnu: Add wfmash.
has caused the debbugs.gnu.org bug report #54635,
regarding [PATCH 0/5] Add wfmash
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs@gnu.org.)


-- 
54635: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=54635
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--- Begin Message --- Subject: [PATCH 0/5] Add wfmash Date: Wed, 30 Mar 2022 14:49:13 +0530
This patchset adds wfmash, and ensures that, in addition to x86_64, it also
cross-compiles to riscv64.

Arun Isaac (5):
  gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux.
  gnu: htslib: Add bzip2 and xz to inputs.
  gnu: atomic-queue: Run tests correctly.
  gnu: atomic-queue: Do not depend on boost when cross-compiling.
  gnu: Add wfmash.

 gnu/packages/bioinformatics.scm | 55 +++++++++++++++++++++++++++++++--
 gnu/packages/cpp.scm            | 26 +++++++++++++---
 gnu/packages/maths.scm          | 15 ++++++++-
 3 files changed, 88 insertions(+), 8 deletions(-)

-- 
2.34.0




--- End Message ---
--- Begin Message --- Subject: Re: [PATCH v2 5/5] gnu: Add wfmash. Date: Thu, 31 Mar 2022 16:31:28 +0300
On Thu, Mar 31, 2022 at 03:07:49PM +0200, Maxime Devos wrote:
> Efraim Flashner schreef op do 31-03-2022 om 15:18 [+0300]:
> > > Arun Isaac schreef op do 31-03-2022 om 12:58 [+0530]:
> > > > +                       (("-march=native") ""))
> > > 
> > > This is also wrong for x86 systems because it makes the build non-
> > > reproducible.  Also, has upstream been informed about some of the
> > > compiler flags being architecture-specific?
> > 
> > I'm pretty sure upstream is aware of it, and the -mcx16 flag. That
> > whole phase doesn't need to be non-x86_64 only, upstream prefers it
> > that way to get fater results
> 
> wfmash could be written to detect CPU features at runtime and there is
> also --tune.  Also, upstream preferring march=native does not make the
> build reproducible.
> 
> > but IMO it would be fine to move it into a snippet.
> 
> It does not have to be in a snippet, it just needs to be reproducible
> (so no march=native, whether on x86 or not).

I suppose not, but the -mcx16 should be in the snippet, since it adds
compiler flags which only work on some architectures. And while we're at
it we can do the -march=native one too.

> Upstream seems to be aware of the non-x86
> (https://github.com/ekg/wfmash/issues/125) but they do not seem to be
> aware of the problems with march=native.
> 

I've pushed these patches with a few tweaks and an additional patch to
run a test suite based on the github workflow in the repository. The
entire check phase takes ~2 minutes on my pinebook pro, so aarch64
doesn't seem to need to skip some tests like riscv64 does.


-- 
Efraim Flashner   <efraim@flashner.co.il>   אפרים פלשנר
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