bug#55145: closed ([PATCH] gnu: Add r-agdex.)

[GNU bug Tracking System]

Your message dated Wed, 27 Apr 2022 16:27:27 +0200
with message-id <87bkwm4n4z.fsf@elephly.net>
and subject line Re: [bug#55145] [PATCH] gnu: Add r-agdex.
has caused the debbugs.gnu.org bug report #55145,
regarding [PATCH] gnu: Add r-agdex.
to be marked as done.

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-- 
55145: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=55145
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> --- Begin Message ---
>
>
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> Subject: 
>
> [PATCH] gnu: Add r-agdex.
>
>
>
>
> Date: 
>
> Wed, 27 Apr 2022 13:20:14 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-agdex): New variable.
> ---
>  gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
>  1 file changed, 27 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 67ee6079c6..1de7f83845 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -1664,6 +1664,33 @@ (define-public r-adamgui
>  the @code{GFAGpathUi} function.")
>      (license license:gpl2+)))
>  
> +(define-public r-agdex
> +  (package
> +    (name "r-agdex")
> +    (version "1.42.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "AGDEX" version))
> +              (sha256
> +               (base32
> +                "0y0q4zdybr5hlsi7qy2hf6c2sqr2z2211wz36dz70jkqyr0ggw64"))))
> +    (properties `((upstream-name . "AGDEX")))
> +    (build-system r-build-system)
> +    (propagated-inputs (list r-biobase r-gseabase))
> +    (home-page "https://bioconductor.org/packages/AGDEX";)
> +    (synopsis
> +     "Evaluate agreement of differential expression for cross-species 
> genomics")
> +    (description
> +     "The objective of @code{AGDEX} is to evaluate whether the results of a 
> pair
> +of two-group differential expression analysis comparisons show a level of
> +agreement that is greater than expected if the group labels for each two-group
> +comparison are randomly assigned.  The agreement is evaluated for the entire
> +transcriptome and (optionally) for a collection of pre-defined gene-sets.
> +Additionally, the procedure performs permutation-based differential expression
> +and meta analysis at both gene and gene-set levels of the data from each
> +experiment.")
> +    (license license:gpl2+)))
> +
>  (define-public r-aneufinder
>    (package
>      (name "r-aneufinder")
>
> base-commit: 4fb6ef6636acd7608889639c1b2e492517256f76
> -- 
> 2.34.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#55145] [PATCH] gnu: Add r-agdex.
>
>
>
>
> Date: 
>
> Wed, 27 Apr 2022 16:27:27 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.6.10; emacs 28.0.50
>
>
>
>
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
> > * gnu/packages/bioconductor.scm (r-agdex): New variable.
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---