bug#56033: closed ([PATCH] gnu: Add r-amountain.)

[GNU bug Tracking System]

Your message dated Thu, 30 Jun 2022 15:30:37 +0200
with message-id <87r1368ei8.fsf@elephly.net>
and subject line Re: [bug#56033] [PATCH] gnu: Add r-amountain.
has caused the debbugs.gnu.org bug report #56033,
regarding [PATCH] gnu: Add r-amountain.
to be marked as done.

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-- 
56033: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56033
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-amountain.
>
>
>
>
> Date: 
>
> Fri, 17 Jun 2022 11:09:20 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-amountain): New variable.
> ---
>  gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
>  1 file changed, 24 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..4fc7949c75 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -1987,6 +1987,30 @@ (define-public r-agimicrorna
>  objects are used so that other packages could be used as well.")
>      (license license:gpl3)))
>  
> +(define-public r-amountain
> +  (package
> +    (name "r-amountain")
> +    (version "1.22.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "AMOUNTAIN" version))
> +              (sha256
> +               (base32
> +                "0vdfabsrisdd7qq28f5ivd0v8zz49szqn677i5lhwnlaix220c54"))))
> +    (properties `((upstream-name . "AMOUNTAIN")))
> +    (build-system r-build-system)
> +    (inputs (list gsl))
> +    (native-inputs (list r-knitr))
> +    (home-page "https://bioconductor.org/packages/AMOUNTAIN";)
> +    (synopsis "Modules for multilayer weighted gene co-expression networks")
> +    (description
> +     "This package provides a pure data-driven gene network, 
> @dfn{WGCN}(weighted
> +gene co-expression network) could be constructed only from expression profile.
> +Different layers in such networks may represent different time points, multiple
> +conditions or various species.  @code{AMOUNTAIN} aims to search active modules
> +in multi-layer WGCN using a continuous optimization approach.")
> +    (license license:gpl2+)))
> +
>  (define-public r-aneufinder
>    (package
>      (name "r-aneufinder")
>
> base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb
> -- 
> 2.36.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#56033] [PATCH] gnu: Add r-amountain.
>
>
>
>
> Date: 
>
> Thu, 30 Jun 2022 15:30:37 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.6.11; emacs 28.1
>
>
>
>
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
> > * gnu/packages/bioconductor.scm (r-amountain): New variable.
>
> Applied.  Thanks for the patch!
>
> -- 
> Ricardo
>
>
> --- End Message ---