bug#65499: closed ([PATCH 1/2] gnu: Add r-bumpymatrix.)

[GNU bug Tracking System]

Your message dated Mon, 28 Aug 2023 10:20:22 +0200
with message-id <87cyz7fuhq.fsf@elephly.net>
and subject line [PATCH 1/2] gnu: Add r-bumpymatrix.
has caused the debbugs.gnu.org bug report #65499,
regarding [PATCH 1/2] gnu: Add r-bumpymatrix.
to be marked as done.

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-- 
65499: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=65499
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 1/2] gnu: Add r-bumpymatrix.
>
>
>
>
> Date: 
>
> Thu, 24 Aug 2023 13:28:27 +0000
>
>
>
>
> * gnu/packages/bioconductor.scm (r-bumpymatrix): New variable.
> ---
>  gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
>  1 file changed, 27 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 74071900a3..6204173277 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -12913,6 +12913,33 @@ (define-public r-siggenes
>  Bayes Analyses of Microarrays} (EBAM).")
>      (license license:lgpl2.0+)))
>  
> +(define-public r-bumpymatrix
> +  (package
> +    (name "r-bumpymatrix")
> +    (version "1.8.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "BumpyMatrix" version))
> +              (sha256
> +               (base32
> +                "021xn5d08phmwv6g8a5d4ap5kcf5syhm6vpr784l4k54lflssr5i"))))
> +    (properties `((upstream-name . "BumpyMatrix")))
> +    (build-system r-build-system)
> +    (propagated-inputs (list r-iranges r-matrix r-s4vectors))
> +    (native-inputs (list r-knitr))
> +    (home-page "https://bioconductor.org/packages/BumpyMatrix";)
> +    (synopsis "Bumpy matrix of non-scalar objects")
> +    (description
> +     "
> +@code{BumpyMatrix} class and subclasses for storing non-scalar objects in 
> matrix entries.
> +This is akin to a ragged array but the raggedness is in the third dimension,
> +much like a bumpy surface - hence the name.  Of particular interest is the
> +@code{BumpyDataFrameMatrix,} where each entry is a Bioconductor data frame.
> +This allows us to naturally represent multivariate data in a format that is
> +compatible with two-dimensional containers like the @code{SummarizedExperiment}
> +and @code{MultiAssayExperiment} objects.")
> +    (license license:expat)))
> +
>  (define-public r-bumphunter
>    (package
>      (name "r-bumphunter")
>
> base-commit: 39fa1ef033fda82cb1d122e0d1675b51acb1db34
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 1/2] gnu: Add r-bumpymatrix.
>
>
>
>
> Date: 
>
> Mon, 28 Aug 2023 10:20:22 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.10.5; emacs 28.2
>
>
>
>
> Applied with minor changes.  Thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---