bug#68371: closed ([PATCH] gnu: Add r-jaspar2020.)

[GNU bug Tracking System]

Your message dated Wed, 10 Jan 2024 18:50:57 +0100
with message-id <87edep5b6l.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-jaspar2020.
has caused the debbugs.gnu.org bug report #68371,
regarding [PATCH] gnu: Add r-jaspar2020.
to be marked as done.

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68371: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=68371
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-jaspar2020.
>
>
>
>
> Date: 
>
> Wed, 10 Jan 2024 14:22:37 +0000
>
>
>
>
> * gnu/packages/bioconductor.scm (r-jaspar2020): New variable.
>
> Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
> ---
>  gnu/packages/bioconductor.scm | 21 +++++++++++++++++++++
>  1 file changed, 21 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 7c4272f8be..e4021fe756 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -6003,6 +6003,27 @@ (define-public r-deconstructsigs
>  closely reconstructs the mutational profile.")
>      (license license:gpl2+)))
>  
> +(define-public r-jaspar2020
> +  (package
> +    (name "r-jaspar2020")
> +    (version "0.99.10")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (bioconductor-uri "JASPAR2020" version
> +                              'annotation))
> +       (sha256
> +        (base32 "0nrp63z7q2ivv5h87f7inpp2qll2dfgj4227l4rbnzii38a2vfdr"))))
> +    (properties `((upstream-name . "JASPAR2020")))
> +    (build-system r-build-system)
> +    (native-inputs (list r-knitr))
> +    (home-page "https://jaspar.elixir.no/";)
> +    (synopsis "Data package for JASPAR database (version 2020)")
> +    (description "Data package for JASPAR2020.
> +To explore these databases, utilize the TFBSTools
> +package (version 1.23.1 or higher).")
> +    (license license:gpl2)))
> +
>  ;; This is a CRAN package, but it depends on Bioconductor packages.
>  (define-public r-jetset
>    (package
>
> base-commit: 537768018ee03a6a9a5562022a16b47ac287d131
> prerequisite-patch-id: 103e1e7922398cbadee6250d96974c6b8ca89fdb
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-jaspar2020.
>
>
>
>
> Date: 
>
> Wed, 10 Jan 2024 18:50:57 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.10.8; emacs 29.1
>
>
>
>
> Applied, thanks!  Note that I moved this to the Annotations section at
> the beginning of the file.
>
> -- 
> Ricardo
>
>
> --- End Message ---