bug#71344: closed ([PATCH] gnu: Add r-rnacrosslinkoo.)

[GNU bug Tracking System]

Your message dated Fri, 28 Jun 2024 12:36:28 +0200
with message-id <87h6ddwdzn.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-rnacrosslinkoo.
has caused the debbugs.gnu.org bug report #71344,
regarding [PATCH] gnu: Add r-rnacrosslinkoo.
to be marked as done.

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-- 
71344: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=71344
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-rnacrosslinkoo.
>
>
>
>
> Date: 
>
> Mon, 3 Jun 2024 15:18:44 +0000
>
>
>
>
> * gnu/packages/bioinformatics.scm (r-rnacrosslinkoo): New variable.
>
> Change-Id: I1ca6dcef9c093627c3743d1176e587cf40053ba0
> ---
>  gnu/packages/bioinformatics.scm | 44 +++++++++++++++++++++++++++++++++
>  1 file changed, 44 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index cdda029809..afdf818b07 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -13915,6 +13915,50 @@ (define-public r-raremetals2
>  trait.")
>      (license license:gpl3)))
>  
> +(define-public r-rnacrosslinkoo
> +  (let ((commit "a317e0fa6ddf34c309529d57390769e2b2b5bfb7")
> +        (revision "1"))
> +    (package
> +      (name "r-rnacrosslinkoo")
> +      (version (git-version "0.1.3" revision commit))
> +      (source
> +       (origin
> +         (method git-fetch)
> +         (uri (git-reference
> +               (url "https://github.com/cran/rnaCrosslinkOO";)
> +               (commit commit)))
> +         (file-name (git-file-name name version))
> +         (sha256
> +          (base32 "0csv9924z0ish960k034qzv3gxh1yabnxni8hsrn5j6xl1r3cdpl"))))
> +      (properties `((upstream-name . "rnaCrosslinkOO")))
> +      (build-system r-build-system)
> +      (propagated-inputs (list r-classdiscovery
> +                               r-doparallel
> +                               r-foreach
> +                               r-genomicranges
> +                               r-ggplot2
> +                               r-ggrepel
> +                               r-heatmap3
> +                               r-igraph
> +                               r-iranges
> +                               r-mass
> +                               r-mixtools
> +                               r-patchwork
> +                               r-r4rna
> +                               r-rcolorbrewer
> +                               r-reshape2
> +                               r-rrna
> +                               r-s4vectors
> +                               r-seqinr
> +                               r-tidyverse
> +                               r-topdom))
> +      (native-inputs (list r-knitr))
> +      (home-page "https://github.com/cran/rnaCrosslinkOO";)
> +      (synopsis "Analysis of RNA crosslinking data")
> +      (description
> +       "The package is ideal for analyzing RNA structure and chemical probing 
> data.")
> +      (license license:gpl3))))
> +
>  (define-public r-rnaseqdtu
>    (let ((commit "5bee1e769d2e1dc6a3f1cecb78078050eeb5b9ac")
>          (revision "1"))
>
> base-commit: 1615084a9a4115d48b75b3db048761e7534efc87
> prerequisite-patch-id: 191a8394dbe6f865a9dc55bfc1b62e9dffc2180d
> prerequisite-patch-id: 3ddb7b281335b1bb4ced1e60a1f243a12a5cba2b
> prerequisite-patch-id: 23c7f331c5a70d80ff65f3b52bd29d19d87c5b8d
> prerequisite-patch-id: a5f9464498560b3ba9ddb894482fc48a3a472d74
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-rnacrosslinkoo.
>
>
>
>
> Date: 
>
> Fri, 28 Jun 2024 12:36:28 +0200
>
>
>
>
> Applied, thank you!
>
> -- 
> Ricardo
>
>
> --- End Message ---