Re: [O] [ANN] org-bibtex.el --- convert between Org headings and bibtex entries

[Matt Lundin]

Hi Eric,

"Eric Schulte" <address@hidden> writes:

> Matt Lundin <address@hidden> writes:
>
> [...]
>>> I understand I may add to the types variable.  When using
>>> org-bibtex-create, I can enter any arbitrary field as a PROPERTY;
>>> however, org-bibtex ignores anything outside of the universe it knows
>>> about.  Would it be bad practice to allow the export of any arbitrary
>>> field type one has recorded?  I think the emacs bibtex-mode may
>>> recognize erroneous bibtex entries.   
>>
>> Bibtex-mode does indeed allow for arbitrary fields, as do bibtex and
>> biblatex. AFAIK, they are simply ignored when processing a bib file. One
>> limitation that arises when storing bibtex data as org properties is
>> that properties drawers are used for much more. For instance, one would
>> probably not want to see "logging = {lognoterepeat}," in one's exported
>> bibtex file.
>>
>> But for biblatex users, it would indeed be prohibitively expensive to
>> have to inform org-mode ahead of time about the innumerable odd fields
>> that various biblatex backends define.
>
> There is already an option for an org-bibtex specific property name
> prefix, (namely `org-bibtex-prefix').  Perhaps when this prefix is used,
> and the `org-bibtex' functions is called with a prefix argument (note:
> entirely different usage of the term "prefix") then only entries which
> begin with the `org-bibtex-prefix' would be exported...  I believe that
> should provide a natural way for arbitrary fields to pass through
> org-bibtex without the user needing to explicitly name them, or there
> being any danger of contamination from existing org-mode properties.

I went ahead and implemented this. (Alas, it meant cluttering up your
very elegant org-bibtex-headline with another mapcar.) 

Assuming that not all users who use a prefix will want to export
arbitrary fields, I made the functionality dependent on two variables:
org-bibtex-prefix and a org-bibtex-export-arbitrary-fields. But this
could be simplified.

I also made the key property configurable.

The patch was created against a patched org-bibtex.el, so I will wait
until your changes get merged into the repo before sending a formal
patch. But I thought I'd send it along to see if you think the changes
are appropriate.

Best,
Matt 

--8<---------------cut here---------------start------------->8---
diff --git a/lisp/org-bibtex.el b/lisp/org-bibtex.el
index 9ee30f1..afa3764 100644
--- a/lisp/org-bibtex.el
+++ b/lisp/org-bibtex.el
@@ -221,6 +221,24 @@ For example setting to 'BIB_' would allow interoperability 
with fireforg."
   :group 'org-bibtex
   :type  'string)
 
+(defcustom org-bibtex-export-arbitrary-fields nil
+  "When converting to bibtex allow fields not defined in `org-bibtex-fields'.
+This only has effect if org-bibtex-prefix is defined, so as to
+ensure that other org-properties, such as CATEGORY or LOGGING are
+not placed in the exported bibtex entry."
+  :group 'org-bibtex
+  :type 'boolean)
+
+;; TODO if ID, test to make sure ID is unique
+(defcustom org-bibtex-key-property "CUSTOM_ID"
+  "Property that holds the bibtex key.
+By default, this is CUSTOM_ID, which enables easy linking to
+bibtex headlines from within an org file. This can be set to ID
+to enable global links, but only with great caution, as global
+IDs must be unique."
+  :group 'org-bibtex
+  :type 'string)
+

 ;;; Utility functions
 (defun org-bibtex-get (property)
@@ -232,7 +250,7 @@ For example setting to 'BIB_' would allow interoperability 
with fireforg."
                           (substring (symbol-name property) 1)
                         property))))
     (org-set-property
-     (concat (unless (string= "CUSTOM_ID" prop) org-bibtex-prefix) prop)
+     (concat (unless (string= org-bibtex-key-property prop) org-bibtex-prefix) 
prop)
      value)))
 
 (defun org-bibtex-headline ()
@@ -246,7 +264,7 @@ For example setting to 'BIB_' would allow interoperability 
with fireforg."
                                      (if (listp e) (apply #'flatten e) (list 
e)))
                                    lsts))))
     (let ((notes (buffer-string))
-          (id (org-bibtex-get "custom_id"))
+          (id (org-bibtex-get org-bibtex-key-property))
           (type (org-bibtex-get "type")))
       (when type
         (let ((entry (format
@@ -254,15 +272,23 @@ For example setting to 'BIB_' would allow 
interoperability with fireforg."
                       (mapconcat
                        (lambda (pair) (format "  %s={%s}" (car pair) (cdr 
pair)))
                        (remove nil
-                        (mapcar
-                         (lambda (field)
-                           (let ((value (or (org-bibtex-get (from-k field))
-                                            (and (equal :title field)
-                                                 (org-get-heading)))))
-                             (when value (cons (from-k field) value))))
-                         (flatten
-                          (get :required (get (to-k type) org-bibtex-types))
-                          (get :optional (get (to-k type) org-bibtex-types)))))
+                        (if (and org-bibtex-export-arbitrary-fields 
org-bibtex-prefix)
+                            (mapcar 
+                             (lambda (kv)
+                               (when (string-match org-bibtex-prefix (car kv))
+                                 (cons (downcase (replace-regexp-in-string 
+                                                  org-bibtex-prefix "" (car 
kv)))
+                                       (cdr kv))))
+                             (org-entry-properties nil 'standard))
+                          (mapcar
+                           (lambda (field)
+                             (let ((value (or (org-bibtex-get (from-k field))
+                                              (and (equal :title field)
+                                                   (org-get-heading)))))
+                               (when value (cons (from-k field) value))))
+                           (flatten
+                            (get :required (get (to-k type) org-bibtex-types))
+                            (get :optional (get (to-k type) 
org-bibtex-types))))))
                        ",\n"))))
           (with-temp-buffer
             (insert entry)
@@ -283,7 +309,7 @@ For example setting to 'BIB_' would allow interoperability 
with fireforg."
 
 (defun org-bibtex-autokey ()
   "Generate an autokey for the current headline"
-  (org-bibtex-put "CUSTOM_ID"
+  (org-bibtex-put org-bibtex-key-property
                   (if org-bibtex-autogen-keys
                       (let ((entry (org-bibtex-headline)))
                         (with-temp-buffer
@@ -312,7 +338,7 @@ With optional argument OPTIONAL, also prompt for optional 
fields."
           (let ((prop (org-bibtex-ask field)))
             (when prop (org-bibtex-put name prop)))))))
   (when (and type (assoc type org-bibtex-types)
-             (not (org-bibtex-get "CUSTOM_ID")))
+             (not (org-bibtex-get org-bibtex-key-property)))
     (org-bibtex-autokey)))
 

@@ -488,7 +514,7 @@ This uses `bibtex-parse-entry'."
         (case (car pair)
           (:title    nil)
           (:type     nil)
-          (:key      (org-bibtex-put "CUSTOM_ID" (cdr pair)))
+          (:key      (org-bibtex-put org-bibtex-key-property (cdr pair)))
           (otherwise (org-bibtex-put (car pair)  (cdr pair))))))))
 
 (provide 'org-bibtex)
--8<---------------cut here---------------end--------------->8---