Re: [O] trouble exporting just one subtree while using babel and R code blocks

[John Hendy]

On Wed, Mar 6, 2013 at 1:33 PM, Christopher W. Ryan
<address@hidden> wrote:
> Thanks John. I was a little nervous about upgrading org version. I use
> Vince Goulet's version of emacs with ESS built-in, and he removed
> org-mode from his latest release (24.2.1)
>
> http://vgoulet.act.ulaval.ca/pub/emacs/NEWS-windows
>
> But I downloaded and installed the newer emacs anyway, and got org-mode
> version 7.9.3f from the org website, and that solved my problem. So far,
> so good . . . .

Yay! Glad things worked for you.

John

>
> --Chris
>
> Christopher W. Ryan, MD, MS
> SUNY Upstate Medical University Clinical Campus at Binghamton
> 425 Robinson Street, Binghamton, NY  13904
> cryanatbinghamtondotedu
>
> "Once we recognize that we do not err out of laziness, stupidity, or
> evil intent, we can liberate ourselves from the impossible burden of
> trying to be permanently right. We can take seriously the proposition
> that we could be in error, without deeming ourselves idiotic or
> unworthy." [Karen Schulz, in Being Wrong: Adventures in the Margin of Error]
>
>
> John Hendy wrote:
>> On Mon, Feb 18, 2013 at 3:10 PM, Christopher W. Ryan
>> <address@hidden> wrote:
>>> I have a long cumulative org file that contains work related to a series
>>> of studies. Each first-level subtree (*) is a new study. I need to be
>>> able to export any given first-level tree on its own, with an output pdf
>>> file name different from the main org filename, and with a title perhaps
>>> different from the * headline. And I need to execute R code as it
>>> exports. I am running org-mode 7.7 on Windows XP
>>>
>>> A sample org file to illustrate the problem looks like this:
>>>
>>> ------------------------------------------
>>>
>>> * goodbye
>>>
>>> foo foo
>>>
>>> * Hello
>>> :PROPERTIES:
>>> :EXPORT_FILE_NAME: TestMyBabelSetup
>>> :EXPORT_TITLE: foobar
>>> :EXPORT_AUTHOR: Christopher W. Ryan, MD MS
>>> :RESULTS: output
>>> :EXPORTS: both
>>> :END:
>>>
>>> foo
>>>
>>> #+begin_src R
>>> rnorm(3)
>>> #+end_src
>>>
>>>
>>> --------------------------------------------
>>>
>>> When I export the whole file to pdf, everything works fine.
>>>
>>> But if I try to export just the * Hello tree, then I get an error:
>>>
>>>  Args out of range: "", -1, 0
>>
>> I can't reproduce. =M-x org-version= is Org-mode version 7.9.3e
>> (7.9.3e-910-g33c4f6)
>>
>> Can you try updating your orgmode version?
>>
>> I attached the results of =C-c C-e 1 p= (export subtree) with the
>> cursor within the * Hello headline contents.
>>
>>
>> Best regards,
>> John
>>
>>>
>>> If I remove anything relating to R and babel from the * Hello tree,
>>> leaving just this:
>>>
>>> -----------------------------------------------
>>> * goodbye
>>>
>>> foo foo
>>>
>>> * Hello
>>> :PROPERTIES:
>>> :EXPORT_FILE_NAME: TestMyBabelSetup
>>> :EXPORT_TITLE: foobar
>>> :EXPORT_AUTHOR: Christopher W. Ryan, MD MS
>>> :END:
>>>
>>> foo
>>>
>>> -------------------------------------------------
>>>
>>> then exporting just the * Hello treee works as expected.
>>>
>>> I'm stumped. What am I doing wrong?
>>>
>>> Thanks.
>>>
>>> --Chris
>>> --
>>> Christopher W. Ryan, MD, MS
>>> SUNY Upstate Medical University Clinical Campus at Binghamton
>>> 425 Robinson Street, Binghamton, NY  13904
>>> cryanatbinghamtondotedu
>>>