Re: [O] BUG - Problem in tangle-mode

[Rainer M Krug]

Rainer M Krug <address@hidden> writes:

> On Tuesday, June 11, 2013, Eric Schulte wrote:
>
>> Rainer M Krug <address@hidden <javascript:;>> writes:
>>
>> > Eric Schulte <address@hidden <javascript:;>> writes:
>> >
>> >>>>>
>> >>>>> I've added a :tangle-mode header argument which may be used to
>> control
>> >>>>> the permissions of tangled files.  See the manual for instructions on
>> >>>>> it's usage.
>> >>>>
>> >>>>
>> >>>> Thanks a lot. I will try it out today or tomorrow.
>> >>>
>> >>> I did, and there is a problem with tangling multiple blocks into a
>> >>> single file:
>> >>>
>> >>
>> >> Oh, stupid of me.  Thanks for sending this alert, I've just pushed up a
>> >> change which should fix this problem.  We now wait to set the file modes
>> >> until after all blocks are tangled and after the post-tangle-hook has
>> >> been run.
>> >>
>> >> Thanks,
>> >
>> > Hi
>> >
>> > Unfortunately, it is now worse, as even without the tangle-mode header,
>> > I can't tangle two blocks - the second block overwrites the before
>> > tangled blocks. It tells me that two blocks were tangled, but only the
>> > last one is in the tangled file.
>> >
>> > I will for revert for now to the version from yesterday.
>> >
>> > Cheers,
>> >
>>
>> Just pushed up a fix.  Cheers,
>
>
> Thanks. Will try it out tomorrow,

Hi

it seems that I have no luck at the moment.

Now the post tangle hook does not seem to be called.

If I use the file below, evaluate the code to set the hook, the hook is
not executed.

,----
| #+PROPERTY: tangle ./test.R
| 
| * Internal configurations                                          :noexport:
| ** Evaluate to run post tangle script
| #+begin_src emacs-lisp :results silent :tangle no :exports none
| (add-hook 'org-babel-post-tangle-hook(
|                                     lambda () (call-process-shell-command 
"./postTangleScript.sh" nil 0 nil))
|         )
| #+end_src
| 
| ** Post tangle script
| #+begin_src sh :tangle postTangleScript.sh
| touch PostTangleScriptHasBeenExecuted
| #+end_src
| 
| #+results:
| 
| 
| * Two blocks
| Block 1
| #+begin_src R
|   suitName <- function(species)
|                     {
|                       return( paste(species$layer, "suitability", sep="_") )
|                     }
| #+end_src  
| 
| Block 2
| #+begin_src R
|   statDistName <- function(species){
|       return( paste(species$layer, "disturbances_static", sep="_") )
|   }
| #+end_src  
`----

The hook is set:
,----
| Its value is
| ((lambda nil
|    (call-process-shell-command "./postTangleScript.sh" nil 0 nil)))
| 
| Original value was nil
`----

Strangely enough, if I use

,----
| #+begin_src emacs-lisp :tangle no
| (defvar org-babel-tangled-file nil
|   "If non-nill, current file was tangled with org-babel-tangle")
| (put 'org-babel-tangled-file 'safe-local-variable 'booleanp)
| 
| (defun org-babel-mark-file-as-tangled ()
|   
|   (when  (string-match "[.]R" (buffer-file-name))
|       (add-file-local-variable 'org-babel-tangled-file t)
|     (add-file-local-variable 'buffer-read-only t)
|     ;; (add-file-local-variable 'eval: (auto-revert-mode))
|     (basic-save-buffer)))
| 
| (add-hook 'org-babel-post-tangle-hook 'org-babel-mark-file-as-tangled)
| #+end_src
`----

and evaluate this block (after resetting the post-tangle-hook), this
function is executed?

Sorry about all the hassles,

Rainer


>
> Cheers,
>
> Rainer
>
>>
>> --
>> Eric Schulte
>> http://cs.unm.edu/~eschulte
>>


-- 
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, 
UCT), Dipl. Phys. (Germany)

Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa

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email:      address@hidden

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