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[O] Export tikz Figures Issue
From: |
Aric |
Subject: |
[O] Export tikz Figures Issue |
Date: |
Sat, 11 Jan 2014 03:58:18 +0000 (UTC) |
User-agent: |
Loom/3.14 (http://gmane.org/) |
I apologize for the sudden flurry of postings, but I am finding some great
solutions within Org.
I have very happily managed to find the more recent references to babel
latex and tikz figures with the imagemagick conversion, and this works
absolutely beautifully within the Org mode buffer.
I have not been successful in exporting the image (html or odt) however. I
can export it if I create a link to the generated png image, rather than
leaving it to the results section like I can with latex. Here is an example:
Working R:
#+name: fig:bplotil8staph
#+headers: :results graphics :file /somewhereelse/bplotil8staph.png
#+begin_src R
bwplot(il.8 ~ impression,....)
#+end_src
#+CAPTION: Plot demonstrating significantly increased IL-8 levels during /S.
aureus/ pneumonia as compared to colonization.
#+RESULTS: bplotil8staph
[[file:/somewhereelse/bplotil8staph.png]]
Note that this link is generated by the R output and I can see the image
along with the caption in both Org buffer and exported files.
Not working so well LaTeX:
#+name: fig:markovdesc
#+headers: :imagemagick yes :iminoptions -density 600 :imoutoptions -
geometry 800
#+headers: :file /somewhereelse/plot_markovModel.png :fit yes
#+begin_src latex :buffer no :packages '(("" "tikz"))
\usetikzlibrary{shadows,arrows,automata,decorations.text,shapes,snakes,fit}
\tikzstyle{ball} = [circle,shading=ball,minimum size=1cm]
\begin{tikzpicture}[->,>=stealth',shorten >=1pt,auto,node distance=4.2cm]
\tikzstyle{everystate}=[draw=black,thick,scale=1,align=center]
\node [state,initial,text width=4em,align=center,ball,text=black,ball
color=green!70!black,drop shadow] (A) {{\small Post-
Transplant State 1}};
\node [state,align=center,text width=4em,ball,text=black,ball
color=purple!70,drop shadow] (B) [right of=A] {{\small BOS
~~~State 2}};
\path (A) edge [bend left] node[above] {{\small $\lambda_{12}(t)$
Covariates~$HR_{12}$}} (B);
\node[state,align=center,text width=4em,ball,text=black,ball
color=blue!50,drop shadow] (C) [below=2.6cm,right=1cm]
{{\small Death ~~~State 3}};
\path (A) edge [] node[left] {{\small $\lambda_{13}(t)$
Covariates~$HR_{13}$}} (C);
\path (B) edge [] node[right] {{\small $\lambda_{23}(t)$
Covariates~$HR_{23}$}} (C);
\end{tikzpicture}
#+end_src
#+CAPTION: Basic idea of the model demonstrating the transition states.
#+RESULTS: fig:markovdesc
#+BEGIN_LaTeX
[[file:/fitz/Rworkarea/gnr/new_work/staph/plot_markovModel.png]]
#+END_LaTeX
For the LaTeX there is no image in the exported buffers and the in-text link
to the image is not active at all. Things only work for latex tikz in the
Org buffer.
What am I doing wrong? Or do I need to create a manual link to the file?
Thanks so much for suggestions.
aric
- [O] Export tikz Figures Issue,
Aric <=