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[Getfem-commits] (no subject)
|
From: |
Konstantinos Poulios |
|
Subject: |
[Getfem-commits] (no subject) |
|
Date: |
Fri, 24 Jun 2022 08:40:14 -0400 (EDT) |
branch: devel-logari81
commit d9bcc35a3e49db2d14ec7b9cd4249c6072d9e6cc
Merge: d87054dd 20c315d5
Author: Konstantinos Poulios <logari81@gmail.com>
AuthorDate: Fri Jun 24 14:40:02 2022 +0200
Merge branch 'master' into devel-logari81
# Conflicts:
# src/getfem/getfem_mesh_region.h
# src/getfem_mesh_region.cc
.codecov.yml | 25 +
.gitignore | 69 +-
.travis.yml | 48 +
ChangeLog | 697 +---
INSTALL | 2 +-
Makefile.am | 7 +-
NEWS | 113 +-
README | 8 +-
autogen.sh | 2 +-
bin/Makefile.am | 6 +-
bin/ansys2getfem_mesh | 6 +-
bin/createmp | 6 +-
bin/dr2dgnuplot | 6 +-
bin/extract_doc | 560 +++-
bin/fig2eps | 6 +-
bin/file_dependencies | 8 +-
bin/makeheadfile | 20 +-
bin/mesh_matlab_to_getfem | 6 +-
bin/rst_to_xml.py | 18 +-
bin/sc2dgnuplot | 6 +-
bin/split_cmdref | 10 +-
bin/test_dist | 6 +-
bin/upload_documentation | 6 +-
bin/upload_html | 13 +-
bin/upload_misc | 6 +-
bin/upload_version | 6 +-
bin/word_count | 6 +-
configure.ac | 1208 +++----
contrib/Makefile.am | 9 +-
contrib/aposteriori/Makefile.am | 8 +-
contrib/aposteriori/aposteriori.cc | 12 +-
contrib/aposteriori/aposteriori.m | 2 +-
contrib/aposteriori/aposteriori.param | 2 +-
contrib/aposteriori/aposteriori.pl | 2 +-
contrib/aposteriori/aposteriori_laplacian.cc | 14 +-
contrib/aposteriori/aposteriori_laplacian.param | 2 +-
contrib/aposteriori/aposteriori_laplacian.pl | 2 +-
contrib/aposteriori/bimaterial_crack_test.param | 2 +-
contrib/bimaterial_crack_test/Makefile.am | 8 +-
.../bimaterial_crack_test/bimaterial_crack_test.cc | 10 +-
.../bimaterial_crack_test.param | 2 +-
.../bimaterial_crack_test/bimaterial_crack_test.pl | 2 +-
contrib/bimaterial_crack_test/crack.cc | 8 +-
contrib/bimaterial_crack_test/crack.param | 2 +-
contrib/bimaterial_crack_test/crack.pl | 2 +-
.../bimaterial_crack_test/crack_exact_solution.cc | 6 +-
.../bimaterial_crack_test/crack_exact_solution.h | 8 +-
contrib/bimaterial_crack_test/getfem_Xfem.cc | 6 +-
contrib/bimaterial_crack_test/getfem_Xfem.h | 6 +-
contrib/bimaterial_crack_test/getfem_spider_fem.h | 6 +-
.../Makefile.am | 13 +-
contrib/continuum_mechanics/QLV_viscoelasticity.py | 196 ++
...ty_finite_strain_linear_hardening_tension_3D.py | 249 ++
...strain_linear_hardening_tension_axisymmetric.py | 238 ++
...strain_linear_hardening_tension_plane_strain.py | 236 ++
contrib/crack_plate/Makefile.am | 8 +-
contrib/crack_plate/crack_bilaplacian.cc | 8 +-
contrib/crack_plate/crack_bilaplacian.h | 8 +-
contrib/crack_plate/crack_bilaplacian.param | 2 +-
contrib/crack_plate/crack_bilaplacian_mixed.param | 2 +-
contrib/crack_plate/crack_bilaplacian_moment.cc | 6 +-
contrib/crack_plate/crack_bilaplacian_problem.cc | 6 +-
contrib/crack_plate/crack_bilaplacian_sif.cc | 6 +-
.../crack_plate/crack_bilaplacian_singularities.cc | 6 +-
contrib/crack_plate/crack_bilaplacian_tools.cc | 6 +-
contrib/crack_plate/crack_mindlin.cc | 10 +-
contrib/crack_plate/crack_mindlin.param | 2 +-
contrib/crack_plate/crack_mindlin.pl | 2 +-
contrib/crack_plate/crack_panel.cc | 8 +-
contrib/crack_plate/crack_panel.param | 2 +-
contrib/crack_plate/demi_plaque.mesh | 2 +-
contrib/crack_plate/serie.pl | 2 +-
contrib/delaminated_crack/Makefile.am | 8 +-
contrib/delaminated_crack/delaminated_crack.cc | 8 +-
contrib/delaminated_crack/delaminated_crack.param | 2 +-
contrib/delaminated_crack/delaminated_crack.pl | 2 +-
contrib/icare/Makefile.am | 8 +-
contrib/icare/icare.cc | 8 +-
contrib/icare/icare.h | 6 +-
contrib/icare/icare.param | 2 +-
contrib/icare/icare.pl | 2 +-
contrib/icare/icareplot.m | 2 +-
contrib/icare/navier_stokes_cylinder1.mesh | 2 +-
contrib/icare/navier_stokes_cylinder2.mesh | 2 +-
contrib/level_set_contact/Makefile.am | 8 +-
contrib/level_set_contact/contact_2D.param | 2 +-
contrib/level_set_contact/contact_3D.param | 2 +-
contrib/level_set_contact/contact_problem.cpp | 2 +-
contrib/level_set_contact/contact_problem.h | 6 +-
contrib/level_set_contact/contact_problem.pl | 2 +-
contrib/level_set_contact/test_contact.cpp | 7 +-
contrib/mixed_elastostatic/Makefile.am | 8 +-
contrib/mixed_elastostatic/mixed_elastostatic.cc | 10 +-
.../mixed_elastostatic/mixed_elastostatic.param | 2 +-
contrib/mixed_elastostatic/mixed_elastostatic.pl | 2 +-
contrib/opt_assembly/Makefile.am | 8 +-
contrib/opt_assembly/opt_assembly.cc | 6 +-
contrib/opt_assembly/opt_assembly.pl | 2 +-
contrib/static_contact_gears/Makefile.am | 8 +-
contrib/static_contact_gears/gear1.msh | 2 +-
contrib/static_contact_gears/gear1_2D.msh | 2 +-
contrib/static_contact_gears/gear1_2teeth.msh | 2 +-
contrib/static_contact_gears/gear2.msh | 2 +-
contrib/static_contact_gears/gear2_2D.msh | 2 +-
contrib/static_contact_gears/gear2_2teeth.msh | 2 +-
.../static_contact_gears/static_contact_gears.cc | 8 +-
.../static_contact_gears.param | 2 +-
.../static_contact_gears/static_contact_gears.pl | 2 +-
.../static_contact_gears_2D.param | 2 +-
.../static_contact_gears_2teeth.param | 2 +-
.../static_contact_gears_u1_u2.cc | 8 +-
.../static_contact_planetary.py | 568 ++--
.../static_contact_planetary_1.msh | 2 +-
.../static_contact_planetary_2.msh | 2 +-
.../static_contact_planetary_3.msh | 2 +-
.../static_contact_planetary_4.msh | 2 +-
.../static_contact_planetary_5.msh | 2 +-
contrib/test_plasticity/Makefile.am | 6 +-
.../conv_test_small_strain_plasticity.py | 12 +-
contrib/test_plasticity/test_plasticity.py | 4 +-
.../test_plasticity/test_small_strain_plasticity.m | 2 +-
.../test_small_strain_plasticity.py | 11 +-
contrib/tests_newton/punch2D_h1.mesh | 2 +-
contrib/tests_newton/punch2D_h4.mesh | 2 +-
contrib/tests_newton/static_contact_1.m | 2 +-
contrib/tests_newton/static_contact_2.m | 2 +-
contrib/tests_newton/static_contact_3.m | 2 +-
contrib/xfem_contact/Makefile.am | 8 +-
contrib/xfem_contact/plot_xfem_dirichlet.m | 2 +-
contrib/xfem_contact/xfem_contact.cc | 8 +-
contrib/xfem_contact/xfem_contact.param | 2 +-
contrib/xfem_contact/xfem_contact.pl | 2 +-
contrib/xfem_contact/xfem_dirichlet.cc | 14 +-
contrib/xfem_contact/xfem_dirichlet.param | 2 +-
contrib/xfem_contact/xfem_stokes.cc | 10 +-
contrib/xfem_contact/xfem_stokes.param | 2 +-
contrib/xfem_stab_unilat_contact/Makefile.am | 8 +-
contrib/xfem_stab_unilat_contact/deformer.m | 2 +-
.../xfem_stab_unilat_contact.cc | 17 +-
.../xfem_stab_unilat_contact.m | 2 +-
.../xfem_stab_unilat_contact.param | 2 +-
.../xfem_stab_unilat_contact.pl | 2 +-
cubature/CUBE4D_5.IM | 6 +-
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doc/sphinx/source/conf.py | 54 +-
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interface/tests/meshes/ladder.mesh | 2 +-
interface/tests/meshes/ladder_1500.mesh | 2 +-
interface/tests/meshes/ladder_370.mesh | 2 +-
interface/tests/meshes/tripod.mesh | 2 +-
interface/tests/python/Makefile.am | 21 +-
interface/tests/python/check_asm.py | 15 +-
interface/tests/python/check_export.py | 11 +-
interface/tests/python/check_export_vtu.py | 146 +
interface/tests/python/check_global_functions.py | 12 +-
interface/tests/python/check_levelset.py | 13 +-
interface/tests/python/check_mixed_mesh.py | 388 +--
interface/tests/python/check_secondary_domain.py | 12 +-
.../tests/python/demo_Mindlin_Reissner_plate.py | 12 +-
.../tests/python/demo_Vector_Potential_Curl_DG.py | 339 ++
interface/tests/python/demo_crack.py | 11 +-
.../python/demo_cracked_thermo_elastic_body.py | 346 +-
interface/tests/python/demo_dynamic_contact_1D.py | 57 +-
.../tests/python/demo_elastic_ring_contact.py | 20 +-
interface/tests/python/demo_elasticity_HHO.py | 207 ++
interface/tests/python/demo_fictitious_domains.py | 15 +-
.../tests/python/demo_finite_strain_plasticity.py | 28 +-
.../python/demo_finite_strain_plasticity_3D.py | 28 +-
.../python/demo_fluide_structure_interaction.py | 241 ++
interface/tests/python/demo_laplacian.py | 17 +-
interface/tests/python/demo_laplacian_DG.py | 36 +-
interface/tests/python/demo_laplacian_HHO.py | 195 ++
.../tests/python/demo_laplacian_aposteriori.py | 22 +-
interface/tests/python/demo_laplacian_pyramid.py | 15 +-
.../tests/python/demo_large_sliding_contact.py | 16 +-
interface/tests/python/demo_mortar.py | 16 +-
interface/tests/python/demo_navier_stokes.py | 11 +-
.../tests/python/demo_nonlinear_elasticity.py | 61 +-
interface/tests/python/demo_parallel_laplacian.py | 55 +-
interface/tests/python/demo_phase_field.py | 34 +-
interface/tests/python/demo_plasticity.py | 16 +-
interface/tests/python/demo_plate.py | 12 +-
interface/tests/python/demo_static_contact.py | 14 +-
interface/tests/python/demo_step_by_step.py | 11 +-
interface/tests/python/demo_stokes_3D_tank.py | 15 +-
interface/tests/python/demo_stokes_3D_tank_draw.py | 14 +-
.../demo_thermo_elasticity_electrical_coupling.py | 61 +-
interface/tests/python/demo_tresca.py | 112 +
interface/tests/python/demo_tripod.py | 17 +-
interface/tests/python/demo_tripod_alt.py | 17 +-
interface/tests/python/demo_truss.py | 108 +
interface/tests/python/demo_unit_disk.py | 100 +
interface/tests/python/demo_wave.py | 18 +-
interface/tests/python/demo_wave_equation.py | 47 +-
interface/tests/python/demo_wheel_contact.py | 13 +-
interface/tests/python/getfem_tvtk.py | 37 +-
interface/tests/python/tutorial1.py | 11 +-
internal_tools/HCT_reduced_triangle_base.cc | 2 +-
internal_tools/HCT_triangle_base.cc | 2 +-
internal_tools/Makefile | 2 +-
internal_tools/argyris_base.cc | 2 +-
internal_tools/c1_piecep3_quad.cc | 2 +-
internal_tools/hermite_tetrahedron_base.cc | 2 +-
internal_tools/make_donut.C | 2 +-
internal_tools/morley_base.cc | 2 +-
internal_tools/simplexification_refelt.cc | 4 +-
m4/Makefile.am | 2 +-
m4/ac_python_devel.m4 | 2 +-
m4/acx_getfem.m4 | 2 +-
m4/ax_check_cxx_flag.m4 | 2 +-
m4/ax_prog_cxx_mpi.m4 | 20 +-
m4/scilab.m4 | 2 +-
msvc/bilaplacian/bilaplacian.vcxproj | 14 +-
msvc/common_debug_settings.props | 1 +
msvc/common_release_settings.props | 5 +-
msvc/elastostatic/elastostatic.vcxproj | 14 +-
msvc/gmm/gmm_arch_config.h | 12 +
msvc/libgetfem/libgetfem.vcxproj | 39 +-
msvc/libgetfemint/libgetfemint.vcxproj | 18 +-
msvc/matlab_interface/matlab_interface.vcxproj | 14 +-
msvc/poly/poly.vcxproj | 14 +-
msvc/superlu/superlu.vcxproj | 14 +-
msvc/test_assembly/test_assembly.vcxproj | 14 +-
msvc/test_contact/contact_problem.cpp | 2 +-
msvc/test_contact/contact_problem.h | 2 +-
msvc/test_contact/run/2Dresults/contact.param | 2 +-
msvc/test_contact/run/3Dresults/contact.param | 2 +-
msvc/test_contact/test_contact.cpp | 2 +-
msvc/test_kdtree/test_kdtree.vcxproj | 14 +-
.../test_laplacian_with_bricks.vcxproj | 14 +-
.../test_level_set_contact.vcxproj | 14 +-
requirements.txt | 4 +
src/Makefile.am | 44 +-
src/bgeot_convex_ref.cc | 74 +-
src/bgeot_convex_ref_simplexified.cc | 6 +-
src/bgeot_convex_structure.cc | 32 +-
src/bgeot_ftool.cc | 19 +-
src/bgeot_geometric_trans.cc | 108 +-
src/bgeot_geotrans_inv.cc | 47 +-
src/bgeot_kdtree.cc | 6 +-
src/bgeot_mesh_structure.cc | 36 +-
src/bgeot_node_tab.cc | 32 +-
src/bgeot_poly.cc | 29 +-
src/bgeot_poly_composite.cc | 229 +-
src/bgeot_rtree.cc | 209 +-
src/bgeot_small_vector.cc | 6 +-
src/bgeot_sparse_tensors.cc | 14 +-
src/bgeot_torus.cc | 21 +-
src/dal_backtrace.cc | 6 +-
src/dal_bit_vector.cc | 6 +-
src/dal_singleton.cc | 67 +-
src/dal_static_stored_objects.cc | 520 ++-
src/getfem/bgeot_comma_init.h | 6 +-
src/getfem/bgeot_config.h | 13 +-
src/getfem/bgeot_convex.h | 6 +-
src/getfem/bgeot_convex_ref.h | 13 +-
src/getfem/bgeot_convex_structure.h | 22 +-
src/getfem/bgeot_ftool.h | 6 +-
src/getfem/bgeot_geometric_trans.h | 15 +-
src/getfem/bgeot_geotrans_inv.h | 9 +-
src/getfem/bgeot_kdtree.h | 13 +-
src/getfem/bgeot_mesh.h | 24 +-
src/getfem/bgeot_mesh_structure.h | 53 +-
src/getfem/bgeot_node_tab.h | 15 +-
src/getfem/bgeot_permutations.h | 6 +-
src/getfem/bgeot_poly.h | 8 +-
src/getfem/bgeot_poly_composite.h | 58 +-
src/getfem/bgeot_rtree.h | 85 +-
src/getfem/bgeot_small_vector.h | 261 +-
src/getfem/bgeot_sparse_tensors.h | 10 +-
src/getfem/bgeot_tensor.h | 105 +-
src/getfem/bgeot_torus.h | 9 +-
src/getfem/dal_backtrace.h | 6 +-
src/getfem/dal_basic.h | 34 +-
src/getfem/dal_bit_vector.h | 6 +-
src/getfem/dal_config.h | 6 +-
src/getfem/dal_naming_system.h | 15 +-
src/getfem/dal_singleton.h | 175 +-
src/getfem/dal_static_stored_objects.h | 56 +-
src/getfem/dal_tas.h | 6 +-
src/getfem/dal_tree_sorted.h | 9 +-
src/getfem/getfem_HHO.h | 86 +
src/getfem/getfem_Navier_Stokes.h | 6 +-
src/getfem/getfem_accumulated_distro.h | 227 ++
src/getfem/getfem_assembling.h | 58 +-
src/getfem/getfem_assembling_tensors.h | 6 +-
src/getfem/getfem_config.h | 20 +-
src/getfem/getfem_contact_and_friction_common.h | 6 +-
src/getfem/getfem_contact_and_friction_integral.h | 6 +-
.../getfem_contact_and_friction_large_sliding.h | 6 +-
src/getfem/getfem_contact_and_friction_nodal.h | 6 +-
src/getfem/getfem_context.h | 16 +-
src/getfem/getfem_continuation.h | 6 +-
src/getfem/getfem_convect.h | 10 +-
src/getfem/getfem_copyable_ptr.h | 6 +-
src/getfem/getfem_crack_sif.h | 6 +-
src/getfem/getfem_deformable_mesh.h | 8 +-
src/getfem/getfem_derivatives.h | 8 +-
src/getfem/getfem_error_estimate.h | 10 +-
src/getfem/getfem_export.h | 118 +-
src/getfem/getfem_fem.h | 63 +-
src/getfem/getfem_fem_global_function.h | 8 +-
src/getfem/getfem_fem_level_set.h | 6 +-
src/getfem/getfem_fourth_order.h | 14 +-
src/getfem/getfem_generic_assembly.h | 225 +-
.../getfem_generic_assembly_compile_and_exec.h | 85 +-
...tfem_generic_assembly_functions_and_operators.h | 6 +-
src/getfem/getfem_generic_assembly_semantic.h | 46 +-
src/getfem/getfem_generic_assembly_tree.h | 58 +-
src/getfem/getfem_global_function.h | 10 +-
src/getfem/getfem_im_data.h | 74 +-
src/getfem/getfem_im_list.h | 2 +-
src/getfem/getfem_import.h | 12 +-
src/getfem/getfem_integration.h | 6 +-
src/getfem/getfem_interpolated_fem.h | 9 +-
src/getfem/getfem_interpolation.h | 42 +-
src/getfem/getfem_level_set.h | 6 +-
src/getfem/getfem_level_set_contact.h | 6 +-
src/getfem/getfem_linearized_plates.h | 59 +-
src/getfem/{dal_backtrace.h => getfem_locale.h} | 47 +-
src/getfem/getfem_mat_elem.h | 6 +-
src/getfem/getfem_mat_elem_type.h | 6 +-
src/getfem/getfem_mesh.h | 30 +-
src/getfem/getfem_mesh_fem.h | 23 +-
src/getfem/getfem_mesh_fem_global_function.h | 8 +-
src/getfem/getfem_mesh_fem_level_set.h | 11 +-
src/getfem/getfem_mesh_fem_product.h | 6 +-
src/getfem/getfem_mesh_fem_sum.h | 6 +-
src/getfem/getfem_mesh_im.h | 6 +-
src/getfem/getfem_mesh_im_level_set.h | 6 +-
src/getfem/getfem_mesh_level_set.h | 6 +-
src/getfem/getfem_mesh_region.h | 152 +-
src/getfem/getfem_mesh_slice.h | 6 +-
src/getfem/getfem_mesh_slicers.h | 9 +-
src/getfem/getfem_mesher.h | 6 +-
src/getfem/getfem_model_solvers.h | 395 +--
src/getfem/getfem_models.h | 365 +-
src/getfem/getfem_nonlinear_elasticity.h | 6 +-
src/getfem/getfem_omp.h | 619 ++--
src/getfem/getfem_partial_mesh_fem.h | 13 +-
src/getfem/getfem_plasticity.h | 19 +-
src/getfem/getfem_projected_fem.h | 20 +-
src/getfem/getfem_regular_meshes.h | 30 +-
src/getfem/getfem_superlu.h | 6 +-
src/getfem/getfem_torus.h | 6 +-
src/getfem_HHO.cc | 1417 ++++++++
src/getfem_assembling_tensors.cc | 34 +-
src/getfem_boost/noncopyable.hpp | 45 -
src/getfem_boost/workaround.hpp | 77 -
src/getfem_contact_and_friction_common.cc | 105 +-
src/getfem_contact_and_friction_integral.cc | 10 +-
src/getfem_contact_and_friction_large_sliding.cc | 11 +-
src/getfem_contact_and_friction_nodal.cc | 22 +-
src/getfem_context.cc | 6 +-
src/getfem_continuation.cc | 6 +-
src/getfem_enumeration_dof_para.cc | 20 +-
src/getfem_error_estimate.cc | 19 +-
src/getfem_export.cc | 449 ++-
src/getfem_fem.cc | 406 ++-
src/getfem_fem_composite.cc | 193 +-
src/getfem_fem_global_function.cc | 35 +-
src/getfem_fem_level_set.cc | 8 +-
src/getfem_fourth_order.cc | 6 +-
src/getfem_generic_assembly_compile_and_exec.cc | 3527 +++++++++++++-------
...fem_generic_assembly_functions_and_operators.cc | 79 +-
src/getfem_generic_assembly_interpolation.cc | 167 +-
src/getfem_generic_assembly_semantic.cc | 456 ++-
src/getfem_generic_assembly_tree.cc | 870 +++--
src/getfem_generic_assembly_workspace.cc | 637 ++--
src/getfem_global_function.cc | 9 +-
src/getfem_im_data.cc | 18 +-
src/getfem_import.cc | 672 ++--
src/getfem_integration.cc | 30 +-
src/getfem_integration_composite.cc | 16 +-
src/getfem_interpolated_fem.cc | 32 +-
src/getfem_interpolation.cc | 16 +-
src/getfem_interpolation_on_deformed_domains.cc | 43 +-
src/getfem_level_set.cc | 6 +-
src/getfem_level_set_contact.cc | 6 +-
src/getfem_linearized_plates.cc | 810 +++--
src/getfem_locale.cc | 58 +
src/getfem_mat_elem.cc | 18 +-
src/getfem_mat_elem_type.cc | 6 +-
src/getfem_mesh.cc | 133 +-
src/getfem_mesh_fem.cc | 36 +-
src/getfem_mesh_fem_global_function.cc | 8 +-
src/getfem_mesh_fem_level_set.cc | 6 +-
src/getfem_mesh_fem_product.cc | 6 +-
src/getfem_mesh_fem_sum.cc | 6 +-
src/getfem_mesh_im.cc | 6 +-
src/getfem_mesh_im_level_set.cc | 8 +-
src/getfem_mesh_level_set.cc | 6 +-
src/getfem_mesh_region.cc | 508 ++-
src/getfem_mesh_slice.cc | 6 +-
src/getfem_mesh_slicers.cc | 7 +-
src/getfem_mesher.cc | 44 +-
src/getfem_model_solvers.cc | 322 +-
src/getfem_models.cc | 1683 +++++-----
src/getfem_nonlinear_elasticity.cc | 112 +-
src/getfem_omp.cc | 465 ++-
src/getfem_partial_mesh_fem.cc | 6 +-
src/getfem_plasticity.cc | 14 +-
src/getfem_projected_fem.cc | 119 +-
src/getfem_regular_meshes.cc | 174 +-
src/getfem_superlu.cc | 6 +-
src/getfem_torus.cc | 6 +-
src/gmm/gmm.h | 6 +-
src/gmm/gmm_MUMPS_interface.h | 6 +-
src/gmm/gmm_algobase.h | 51 +-
src/gmm/gmm_blas.h | 12 +-
src/gmm/gmm_blas_interface.h | 197 +-
src/gmm/gmm_condition_number.h | 6 +-
src/gmm/gmm_conjugated.h | 6 +-
src/gmm/gmm_def.h | 6 +-
src/gmm/gmm_dense_Householder.h | 6 +-
src/gmm/gmm_dense_lu.h | 8 +-
src/gmm/gmm_dense_matrix_functions.h | 6 +-
src/gmm/gmm_dense_qr.h | 6 +-
src/gmm/gmm_dense_sylvester.h | 6 +-
src/gmm/gmm_domain_decomp.h | 12 +-
src/gmm/gmm_except.h | 28 +-
src/gmm/gmm_feedback_management.h | 12 +-
src/gmm/gmm_inoutput.h | 62 +-
src/gmm/gmm_interface.h | 6 +-
src/gmm/gmm_interface_bgeot.h | 6 +-
src/gmm/gmm_iter.h | 6 +-
src/gmm/gmm_iter_solvers.h | 6 +-
src/gmm/gmm_kernel.h | 6 +-
src/gmm/gmm_lapack_interface.h | 89 +-
src/gmm/gmm_least_squares_cg.h | 6 +-
src/gmm/gmm_matrix.h | 416 ++-
src/gmm/gmm_modified_gram_schmidt.h | 8 +-
src/gmm/gmm_opt.h | 107 +-
src/gmm/gmm_precond.h | 8 +-
src/gmm/gmm_precond_diagonal.h | 6 +-
src/gmm/gmm_precond_ildlt.h | 8 +-
src/gmm/gmm_precond_ildltt.h | 6 +-
src/gmm/gmm_precond_ilu.h | 8 +-
src/gmm/gmm_precond_ilut.h | 8 +-
src/gmm/gmm_precond_ilutp.h | 6 +-
src/gmm/gmm_precond_mr_approx_inverse.h | 8 +-
src/gmm/gmm_range_basis.h | 6 +-
src/gmm/gmm_real_part.h | 13 +-
src/gmm/gmm_ref.h | 6 +-
src/gmm/gmm_scaled.h | 6 +-
src/gmm/gmm_solver_Schwarz_additive.h | 6 +-
src/gmm/gmm_solver_bfgs.h | 6 +-
src/gmm/gmm_solver_bicgstab.h | 8 +-
src/gmm/gmm_solver_cg.h | 8 +-
src/gmm/gmm_solver_constrained_cg.h | 8 +-
src/gmm/gmm_solver_gmres.h | 8 +-
src/gmm/gmm_solver_idgmres.h | 6 +-
src/gmm/gmm_solver_qmr.h | 8 +-
src/gmm/gmm_std.h | 81 +-
src/gmm/gmm_sub_index.h | 6 +-
src/gmm/gmm_sub_matrix.h | 6 +-
src/gmm/gmm_sub_vector.h | 15 +-
src/gmm/gmm_superlu_interface.h | 6 +-
src/gmm/gmm_transposed.h | 6 +-
src/gmm/gmm_tri_solve.h | 6 +-
src/gmm/gmm_vector.h | 615 ++--
src/gmm/gmm_vector_to_matrix.h | 6 +-
superlu/BLAS.c | 2 +-
superlu/Makefile.am | 2 +-
tests/Makefile.am | 20 +-
tests/bilaplacian.cc | 10 +-
tests/bilaplacian.param | 2 +-
tests/bilaplacian.pl | 6 +-
tests/crack.cc | 13 +-
tests/crack.param | 2 +-
tests/crack.pl | 6 +-
tests/cyl_slicer.cc | 13 +-
tests/cyl_slicer.pl | 6 +-
tests/dynamic_array.cc | 8 +-
tests/dynamic_array.pl | 6 +-
tests/dynamic_tas.cc | 6 +-
tests/dynamic_tas.pl | 6 +-
tests/elastostatic.cc | 12 +-
tests/elastostatic.param | 4 +-
tests/elastostatic.pl | 6 +-
tests/geo_trans_inv.cc | 6 +-
tests/geo_trans_inv.param | 2 +-
tests/geo_trans_inv.pl | 6 +-
tests/gmm_torture01_lusolve.cc | 6 +-
tests/gmm_torture02_baseop.cc | 6 +-
tests/gmm_torture05_mult.cc | 6 +-
tests/gmm_torture06_mat_mult.cc | 6 +-
tests/gmm_torture10_qr.cc | 6 +-
tests/gmm_torture15_sub.cc | 6 +-
tests/gmm_torture20_iterative_solvers.cc | 6 +-
tests/heat_equation.cc | 13 +-
tests/heat_equation.param | 2 +-
tests/heat_equation.pl | 6 +-
tests/helmholtz.cc | 28 +-
tests/helmholtz.param | 2 +-
tests/helmholtz.pl | 6 +-
tests/integration.cc | 6 +-
tests/integration.pl | 6 +-
tests/laplacian.cc | 13 +-
tests/laplacian.param | 2 +-
tests/laplacian.pl | 6 +-
tests/laplacian_conv_pk.pl | 6 +-
tests/laplacian_with_bricks.cc | 21 +-
tests/laplacian_with_bricks.param | 2 +-
tests/laplacian_with_bricks.pl | 6 +-
tests/make_gmm_test.pl | 6 +-
tests/meshes/disc_2D_degree3.mesh | 2 +-
tests/meshes/disc_P2_h0_3.mesh | 2 +-
tests/meshes/disc_P2_h0_5.mesh | 2 +-
tests/meshes/disc_P2_h1.mesh | 2 +-
tests/meshes/disc_P2_h10.mesh | 2 +-
tests/meshes/disc_P2_h2.mesh | 2 +-
tests/meshes/disc_P2_h4.mesh | 2 +-
tests/meshes/disc_P2_h6.mesh | 2 +-
tests/meshes/disc_P2_h8.mesh | 2 +-
tests/meshes/disc_with_a_hole.mesh | 2 +-
tests/meshes/donut_regulier_32_elements.mesh | 2 +-
tests/meshes/donut_regulier_512_elements.mesh | 2 +-
tests/meshes/donut_regulier_72_elements.mesh | 2 +-
tests/meshes/donut_regulier_8_elements_288ddl.mesh | 2 +-
tests/meshes/multi_body.mesh | 2 +-
tests/meshes/punch2D_1.mesh | 2 +-
tests/meshes/punch2D_2.mesh | 2 +-
.../sphere_with_quadratic_tetra_16000_elts.mesh | 2 +-
.../sphere_with_quadratic_tetra_2000_elts.mesh | 2 +-
.../sphere_with_quadratic_tetra_400_elts.mesh | 2 +-
.../sphere_with_quadratic_tetra_80_elts.mesh | 2 +-
.../meshes/sphere_with_quadratic_tetra_8_elts.mesh | 2 +-
tests/nonlinear_elastostatic.cc | 13 +-
tests/nonlinear_elastostatic.param | 2 +-
tests/nonlinear_elastostatic.pl | 6 +-
tests/nonlinear_membrane.cc | 10 +-
tests/nonlinear_membrane.param | 2 +-
tests/nonlinear_membrane.pl | 6 +-
tests/plasticity.cc | 13 +-
tests/plasticity.param | 2 +-
tests/plasticity.pl | 6 +-
tests/plate.cc | 13 +-
tests/plate.param | 2 +-
tests/plate.pl | 6 +-
tests/poly.cc | 6 +-
tests/poly.pl | 6 +-
tests/schwarz_additive.cc | 8 +-
tests/schwarz_additive.param | 2 +-
tests/schwarz_additive.pl | 6 +-
tests/stokes.cc | 12 +-
tests/stokes.param | 2 +-
tests/stokes.pl | 6 +-
tests/test_assembly.cc | 12 +-
tests/test_assembly.pl | 6 +-
tests/test_assembly_assignment.cc | 59 +
...est_assembly.pl => test_assembly_assignment.pl} | 23 +-
tests/test_condensation.cc | 191 ++
tests/test_condensation.pl | 105 +
tests/test_continuation.cc | 12 +-
tests/test_continuation.param | 2 +-
tests/test_continuation.pl | 6 +-
tests/test_gmm_matrix_functions.cc | 10 +-
tests/test_gmm_matrix_functions.pl | 6 +-
tests/test_int_set.cc | 6 +-
tests/test_int_set.pl | 6 +-
tests/test_internal_variables.cc | 117 +
...test_assembly.pl => test_internal_variables.pl} | 25 +-
tests/test_interpolated_fem.cc | 12 +-
tests/test_interpolated_fem.param | 2 +-
tests/test_interpolated_fem.pl | 6 +-
tests/test_interpolation.cc | 6 +-
tests/test_interpolation.pl | 6 +-
tests/test_kdtree.cc | 8 +-
tests/test_kdtree.pl | 6 +-
tests/test_mat_elem.cc | 6 +-
tests/test_mat_elem.param | 2 +-
tests/test_mat_elem.pl | 6 +-
tests/test_mesh.cc | 6 +-
tests/test_mesh.pl | 6 +-
tests/test_mesh_generation.cc | 6 +-
tests/test_mesh_generation.pl | 6 +-
tests/test_mesh_im_level_set.cc | 8 +-
tests/test_mesh_im_level_set.pl | 6 +-
tests/test_range_basis.cc | 11 +-
tests/test_range_basis.param | 2 +-
tests/test_range_basis.pl | 6 +-
tests/test_rtree.cc | 14 +-
tests/test_rtree.pl | 6 +-
tests/test_slice.cc | 6 +-
tests/test_slice.pl | 6 +-
tests/test_small_vector.cc | 9 +-
tests/test_small_vector.pl | 6 +-
tests/test_tree_sorted.cc | 6 +-
tests/test_tree_sorted.pl | 6 +-
tests/thermo_elasticity_electrical_coupling.cc | 46 +-
tests/thermo_elasticity_electrical_coupling.param | 2 +-
tests/thermo_elasticity_electrical_coupling.pl | 6 +-
tests/wave_equation.cc | 13 +-
tests/wave_equation.param | 2 +-
tests/wave_equation.pl | 6 +-
1230 files changed, 26977 insertions(+), 14954 deletions(-)
diff --cc src/getfem/getfem_mesh_region.h
index 924319e4,2ae60a45..e41b4b74
--- a/src/getfem/getfem_mesh_region.h
+++ b/src/getfem/getfem_mesh_region.h
@@@ -286,12 -275,9 +275,9 @@@ namespace getfem
friend std::ostream & operator <<(std::ostream &os, const mesh_region &w);
};
- typedef mesh_region::visitor mr_visitor;
+ using mr_visitor = mesh_region::visitor;
- /* Dummy mesh_region for default parameter of functions. */
+ /** Dummy mesh_region for default parameter of functions. */
const mesh_region &dummy_mesh_region();
- }
-
-
- #endif
-} /* end of namespace getfem. */
++} /* end of namespace getfem. */