[Gsrc-commit] trunk r8624: update samtools to 1.16.1

[Carl Hansen]

------------------------------------------------------------
revno: 8624
revision-id: carlhansen1234@gmail.com-20221004180416-lw4dqqcogpeqrv76
parent: carlhansen1234@gmail.com-20221004180355-w0dbc8f32z4v016t
committer: carlhansen1234@gmail.com
branch nick: trunk
timestamp: Tue 2022-10-04 11:04:16 -0700
message:
  update samtools to 1.16.1
modified:
  pkg/bio/samtools/Makefile      makefile-20160617195624-kwz1a09vkg4le6fu-176
  pkg/bio/samtools/sha256sums    sha256sums-20160617195624-kwz1a09vkg4le6fu-177

=== modified file 'pkg/bio/samtools/Makefile'
--- a/pkg/bio/samtools/Makefile 2021-10-27 07:04:10 +0000
+++ b/pkg/bio/samtools/Makefile 2022-10-04 18:04:16 +0000
@@ -1,5 +1,5 @@
 # Copyright © 2014 Brandon Invergo <brandon@invergo.net>
-# Copyright © 2017, 2021 Carl Hansen <carlhansen@gnu.org>
+# Copyright © 2017, 2021, 2022 Carl Hansen <carlhansen@gnu.org>
 #
 # This file is part of BioSRC and GSRC.  the GNU Source Release Collection.
 # http://www.gnu.org/software/gsrc
@@ -22,7 +22,7 @@
 
 NAME = SAMtools
 GARNAME = samtools
-GARVERSION = 1.14
+GARVERSION = 1.16.1
 HOME_URL = http://https://www.htslib.org/download/
 DESCRIPTION = Utilities for manipulating alignments in the SAM format
 define BLURB
@@ -39,7 +39,9 @@
 MASTER_SITES = $(MASTER_GITHUB)
 MASTER_SUBDIR = $(GARNAME)/$(GARNAME)/releases/download/$(GARVERSION)/
 DISTFILES = $(DISTNAME).tar.bz2
+CONFIGURE_SCRIPTS =$(WORKSRC)/configure
 #BUILD_SCRIPTS = $(WORKSRC)/Makefile
+#BUILD_SCRIPTS = it
 #INSTALL_SCRIPTS = $(WORKSRC)/Makefile lib headers #programs lib headers man
 
 BUILDDEPS =
@@ -49,7 +51,12 @@
 
 include ../../../gar/gar.lib/auto.mk
 include config.mk
-export DESTDIR= $(packageprefix)/packages/$(PACKAGENAME)
+
+#export DESTDIR=$(packageprefix)/packages/$(PACKAGENAME)
+
+inf:
+       echo $(WORKSRC) $(WORKOBJ)
+
 
 pre-install: build
        mkdir -p $(packageprefix)/packages/$(PACKAGENAME)

=== modified file 'pkg/bio/samtools/sha256sums'
--- a/pkg/bio/samtools/sha256sums       2021-10-27 07:04:10 +0000
+++ b/pkg/bio/samtools/sha256sums       2022-10-04 18:04:16 +0000
@@ -1,1 +1,1 @@
-9341dabaa98b0ea7d60fd47e42af25df43a7d3d64d8e654cdf852974546b7d74  
download/samtools-1.14.tar.bz2
+2fa0a25f78594cf23d07c9d32d5060a14f1c5ee14d7b0af7a8a71abc9fdf1d07  
download/samtools-1.16.1.tar.bz2