branch core-updates updated (212163f -> 622c22c)

[Mark H. Weaver]

mhw pushed a change to branch core-updates
in repository guix.

      from  212163f   gnu: dico: Patch 'idxgcide' bug.
      adds  f2e7917   gnu: r-s4vectors: Update to 0.10.2.
      adds  2a3e325   gnu: r-genomeinfodb: Update to 1.8.3.
      adds  5131e21   gnu: r-rtracklayer: Update to 1.32.2.
      adds  29b0cc8   gnu: r-genomicalignments: Update to 1.8.4.
      adds  1864e05   gnu: r-summarizedexperiment: Update to 1.2.3.
      adds  d104fc6   gnu: r-biostrings: Update to 2.40.2.
      adds  a22999f   gnu: r-biocparallel: Update to 1.6.3.
      adds  bab15cc   gnu: r-annotationdbi: Update to 1.34.4.
      adds  a463055   gnu: r-genomicranges: Update to 1.24.2.
      adds  2b2ff0b   gnu: r-xvector: Update to 0.12.1.
      adds  f403941   gnu: r-limma: Update to 3.28.17.
      adds  b0f0778   gnu: r-iranges: Update to 2.6.1.
      adds  2c9f625   gnu: r-bsgenome: Update to 1.40.1.
      adds  6547708   gnu: r-genomicfeatures: Update to 1.24.5.
      adds  189b154   doc: Mention separate branch for packages with many 
dependents.
      adds  3a78fab   doc: Send changes in your patch which are related.
      adds  d222522   doc: Discourage software bundling.
      adds  71d9b98   gnu: gnome: Propagate file-roller.
      adds  cb55f9c   gnu: Add asciinema.
      adds  6980511   packages: Add 'hidden-package'.
      adds  386b71d   gnu: commencement: 'guile-final' is now "hidden".
      adds  ae46cd0   gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207].
       new  622c22c   Merge branch 'master' into core-updates

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 doc/contributing.texi                           |   28 +++
 gnu/local.mk                                    |    6 +-
 gnu/packages.scm                                |    3 +-
 gnu/packages/commencement.scm                   |    4 +-
 gnu/packages/gd.scm                             |   10 +-
 gnu/packages/gnome.scm                          |    2 +
 gnu/packages/patches/gd-CVE-2016-5766.patch     |   81 --------
 gnu/packages/patches/gd-CVE-2016-6128.patch     |  253 -----------------------
 gnu/packages/patches/gd-CVE-2016-6132.patch     |   55 -----
 gnu/packages/patches/gd-CVE-2016-6214.patch     |   66 ------
 gnu/packages/patches/gd-fix-test-on-i686.patch  |   34 ---
 gnu/packages/patches/gd-fix-tests-on-i686.patch |   61 ++++++
 gnu/packages/terminals.scm                      |   38 ++++
 guix/packages.scm                               |   15 ++
 tests/packages.scm                              |   18 ++
 15 files changed, 171 insertions(+), 503 deletions(-)
 delete mode 100644 gnu/packages/patches/gd-CVE-2016-5766.patch
 delete mode 100644 gnu/packages/patches/gd-CVE-2016-6128.patch
 delete mode 100644 gnu/packages/patches/gd-CVE-2016-6132.patch
 delete mode 100644 gnu/packages/patches/gd-CVE-2016-6214.patch
 delete mode 100644 gnu/packages/patches/gd-fix-test-on-i686.patch
 create mode 100644 gnu/packages/patches/gd-fix-tests-on-i686.patch