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06/09: gnu: bedops: Use INVOKE.
From: |
Ricardo Wurmus |
Subject: |
06/09: gnu: bedops: Use INVOKE. |
Date: |
Sat, 20 Oct 2018 17:40:11 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 337d72fb4410d0ed255b032ca55d2d9dd3dd3065
Author: Ricardo Wurmus <address@hidden>
Date: Sat Oct 20 22:05:10 2018 +0200
gnu: bedops: Use INVOKE.
* gnu/packages/bioinformatics.scm (bedops)[arguments]: Use INVOKE.
---
gnu/packages/bioinformatics.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4192a6c..ef1f1ae 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -367,9 +367,9 @@ transparently with both VCFs and BCFs, both uncompressed
and BGZF-compressed.")
;; Unpack the tarballs to benefit from shebang patching.
(with-directory-excursion "third-party"
- (and (zero? (system* "tar" "xvf" "jansson-2.6.tar.bz2"))
- (zero? (system* "tar" "xvf" "zlib-1.2.7.tar.bz2"))
- (zero? (system* "tar" "xvf" "bzip2-1.0.6.tar.bz2"))))
+ (invoke "tar" "xvf" "jansson-2.6.tar.bz2")
+ (invoke "tar" "xvf" "zlib-1.2.7.tar.bz2")
+ (invoke "tar" "xvf" "bzip2-1.0.6.tar.bz2"))
;; Disable unpacking of tarballs in Makefile.
(substitute* "system.mk/Makefile.linux"
(("^\tbzcat .*") "address@hidden \"not unpacking\"\n")
- branch master updated (bfa47f1 -> 21c8374), Ricardo Wurmus, 2018/10/20
- 03/09: gnu: clipper: Update to 1.2.1., Ricardo Wurmus, 2018/10/20
- 08/09: gnu: blast+: Use INVOKE and return #T unconditionally., Ricardo Wurmus, 2018/10/20
- 09/09: gnu: bowtie: Update to 2.3.4.3., Ricardo Wurmus, 2018/10/20
- 01/09: gnu: Add bedtools-2.26., Ricardo Wurmus, 2018/10/20
- 06/09: gnu: bedops: Use INVOKE.,
Ricardo Wurmus <=
- 04/09: gnu: aragorn: Use invoke and simplify., Ricardo Wurmus, 2018/10/20
- 02/09: gnu: python-pybedtools: Update to 0.7.10., Ricardo Wurmus, 2018/10/20
- 05/09: gnu: bamm: Fetch from git and use INVOKE., Ricardo Wurmus, 2018/10/20
- 07/09: gnu: bedops: Update to 2.4.35., Ricardo Wurmus, 2018/10/20