01/02: Merge branch 'master' into core-updates

[Marius Bakke]

mbakke pushed a commit to branch core-updates
in repository guix.

commit c166a88dea354f0fb253e7d389e68f1b11fe1de4
Merge: ffddb42 63abd1e
Author: Marius Bakke <address@hidden>
Date:   Mon Oct 22 23:07:16 2018 +0200

    Merge branch 'master' into core-updates

 gnu/build/install.scm                              |   2 +-
 gnu/local.mk                                       |   4 -
 gnu/packages/bioconductor.scm                      |  26 +
 gnu/packages/bioinformatics.scm                    | 658 +++++++++++----------
 gnu/packages/build-tools.scm                       |  58 ++
 gnu/packages/crypto.scm                            |   4 +-
 gnu/packages/dns.scm                               |   4 +-
 gnu/packages/education.scm                         |   8 +-
 gnu/packages/emacs.scm                             |  49 +-
 gnu/packages/gnome.scm                             |   6 +-
 gnu/packages/linux.scm                             |  46 +-
 gnu/packages/lxqt.scm                              |  72 ++-
 gnu/packages/mpd.scm                               |   4 +-
 .../patches/crossmap-allow-system-pysam.patch      | 121 ----
 .../patches/delly-use-system-libraries.patch       |  56 --
 gnu/packages/patches/liblxqt-include.patch         |  14 -
 .../patches/tophat-build-with-later-seqan.patch    |  24 -
 gnu/packages/python-crypto.scm                     |  12 +-
 gnu/packages/python.scm                            |  54 +-
 gnu/packages/samba.scm                             |   4 +-
 gnu/packages/ssh.scm                               |   4 +-
 gnu/packages/tex.scm                               | 189 ++++++
 gnu/packages/video.scm                             |   4 +-
 gnu/packages/xorg.scm                              |   8 +-
 24 files changed, 797 insertions(+), 634 deletions(-)