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15/22: gnu: vsearch: Update to 2.9.1.
From: |
Ricardo Wurmus |
Subject: |
15/22: gnu: vsearch: Update to 2.9.1. |
Date: |
Thu, 8 Nov 2018 04:11:13 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 86c6928ea39aff622124030c20404ce94dae9b49
Author: Ricardo Wurmus <address@hidden>
Date: Thu Nov 8 09:46:42 2018 +0100
gnu: vsearch: Update to 2.9.1.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.9.1.
* gnu/packages/patches/vsearch-unbundle-cityhash.patch: Update.
---
gnu/packages/bioinformatics.scm | 4 ++--
gnu/packages/patches/vsearch-unbundle-cityhash.patch | 6 +++---
2 files changed, 5 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9954fcf..d9362ea 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6825,7 +6825,7 @@ SELECT or UPDATE queries to an end-point.")
(define-public vsearch
(package
(name "vsearch")
- (version "2.8.0")
+ (version "2.9.1")
(source
(origin
(method git-fetch)
@@ -6835,7 +6835,7 @@ SELECT or UPDATE queries to an end-point.")
(file-name (git-file-name name version))
(sha256
(base32
- "0lrw6n75gmqkxl053yi2pwwvnzwf1r79ypzxgv6m0kw6df5fwv6r"))
+ "0vhrpjfdf75ba04b24xknp41790cvcgwl0vgpy7qbzj5xh2521ss"))
(patches (search-patches "vsearch-unbundle-cityhash.patch"))
(snippet
'(begin
diff --git a/gnu/packages/patches/vsearch-unbundle-cityhash.patch
b/gnu/packages/patches/vsearch-unbundle-cityhash.patch
index b1ecb1f..2a2ab13 100644
--- a/gnu/packages/patches/vsearch-unbundle-cityhash.patch
+++ b/gnu/packages/patches/vsearch-unbundle-cityhash.patch
@@ -6,7 +6,7 @@ index e56a8a2..4adcc48 100644
if TARGET_PPC
AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -mcpu=power8
else
--AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g
+-AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic
+AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -lcityhash
endif
@@ -39,7 +39,7 @@ index e56a8a2..4adcc48 100644
-
if TARGET_WIN
--libcityhash_a_CXXFLAGS = -Wall -Wno-sign-compare -O3 -g -D_MSC_VER
+-libcityhash_a_CXXFLAGS = $(AM_CXXFLAGS) -Wno-sign-compare -D_MSC_VER
-__top_builddir__bin_vsearch_LDFLAGS = -static
-__top_builddir__bin_vsearch_LDADD = libregex.a libcityhash.a libcpu_ssse3.a
libcpu_sse2.a
+__top_builddir__bin_vsearch_LDFLAGS = -static -lcityhash
@@ -47,7 +47,7 @@ index e56a8a2..4adcc48 100644
else
--libcityhash_a_CXXFLAGS = -Wall -Wno-sign-compare -O3 -g
+-libcityhash_a_CXXFLAGS = $(AM_CXXFLAGS) -Wno-sign-compare
-
if TARGET_PPC
-__top_builddir__bin_vsearch_LDADD = libcityhash.a libcpu.a
- 16/22: gnu: sailfish: Use INVOKE., (continued)
- 16/22: gnu: sailfish: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 07/22: gnu: sra-tools: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 14/22: gnu: sra-tools: Update to 2.9.3., Ricardo Wurmus, 2018/11/08
- 11/22: gnu: ngs-sdk: Update to 2.9.3., Ricardo Wurmus, 2018/11/08
- 12/22: gnu: ncbi-vdb: Update to 2.9.3., Ricardo Wurmus, 2018/11/08
- 08/22: gnu: taxtastic: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 09/22: gnu: emboss: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 01/22: gnu: fraggenescan: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 19/22: gnu: pplacer-scripts: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 03/22: gnu: vsearch: Remove custom autogen phase., Ricardo Wurmus, 2018/11/08
- 15/22: gnu: vsearch: Update to 2.9.1.,
Ricardo Wurmus <=
- 18/22: gnu: roary: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 21/22: gnu: cmus: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 06/22: gnu: muscle: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 13/22: gnu: plink-ng: Fetch sources from git., Ricardo Wurmus, 2018/11/08
- 22/22: gnu: cmus: Fetch sources from git., Ricardo Wurmus, 2018/11/08