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branch core-updates updated (2d54685 -> 4f70db9)
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From: |
Marius Bakke |
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Subject: |
branch core-updates updated (2d54685 -> 4f70db9) |
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Date: |
Mon, 19 Nov 2018 19:41:53 -0500 (EST) |
mbakke pushed a change to branch core-updates
in repository guix.
from 2d54685 gnu: hurd: Build against glibc 2.28.
adds ee2cfdf download: Add Software Heritage as a content-addressed
mirror.
adds 89f1fee download: Access content-addressed mirrors over HTTPS.
adds 7a54b22 gnu: guix-daemon: Install 'guix-authenticate'.
adds 0fe1fba daemon: Install 'authenticate' script under
LIBEXECDIR/guix.
adds 54fcd54 gnu: Add python-mpi4py.
adds 90ff287 gnu: Add python-petsc4py.
adds 6b5687d gnu: Add python-slepc4py.
adds f7a4757 gnu: Add python-fenics-dijitso.
adds 3941cf5 gnu: Add python-fenics-ufl.
adds 0fc4998 gnu: Add python-fenics-fiat.
adds 6b7f1f8 gnu: Add python-fenics-ffc.
adds 0ace6c0 gnu: Add fenics-dolfin.
adds ae0f1dd gnu: Add fenics.
adds 6a1cff7 gnu: address@hidden: Update to 4.9.137.
adds 24ba798 gnu: address@hidden: Update to 4.14.81.
adds 7413c31 gnu: linux-libre: Update to 4.19.2.
adds 2d86eaf gnu: sambamba: Update to 0.6.8.
adds c61f36f doc: Fix typo in connman config.
adds 30f0d21 gnu: Add nanopolish.
adds 03592a6 gnu: emacs-realgud: Patch configure.ac to repair the
build.
adds 44ff80f gnu: gp2c: Update to 0.0.11pl1.
adds eea7cd7 gnu: Add cmh.
adds 2aee2a9 guile: newt: Update revision to 2.
adds 0289dc1 progress: Fix crash because of division by zero.
adds d827fd3 progress: Do not display the last 0B transfer when size
is unknown.
adds a7b7d48 gnu: tiled: Update to 1.2.1.
adds 54ca1a3 doc: Recommend pool.sks-keyservers.net.
adds 7a44e87 gnu: Add caps-plugins-lv2.
adds 243bdcc gnu: Add git-when-merged.
adds bca6396 doc: Mention that ./pre-inst-env is generated.
adds 0c7707d gnu: u-boot: Update to 2018.11.
adds fc9dbf4 llvm: Build with RTTI by default.
adds 7ed018e gnu: Add TomsFastMath.
adds 0a41123 gnu: Add ClamAV.
adds f8cba3f gnu: mesa: Stay on RTTI-less LLVM.
adds d22ba64 gnu: ccl: Include x86-headers and remove missing
"contrib" folder.
adds 1472d19 gnu: maxima: Fix tests on i686 and x86_64.
adds 5a0affb build-system/ocaml: Use invoke and return #t.
adds 564cf93 gnu: ocaml: Update to 4.7.0.
adds b297934 activation: Aways pass '-d HOME' to 'useradd'.
adds 46c296d bootloader: De-monadify configuration file generators.
adds a7ef45d system: Simplify kernel argument handling.
adds e34ae75 linux-initrd: Return file-like objects instead of monadic
values.
adds 35b4468 system: De-monadify 'operating-system-boot-parameters'.
adds 5ece56d system: Please Emacs.
adds 9782c82 system: De-monadify 'operating-system-bootcfg'.
adds 8bff7dc vm: Remove explicit calls to
'operating-system-derivation'.
adds 6e47628 guix system: Simplify bootloader package handling.
adds 52ee447 guix system: De-monadify bootloader installation script.
adds ab6caf4 guix system: Clarify 'perform-action'.
adds 5c40a69 gnu: Add libfdk 'FDK AAC' library.
adds 1d6669a guix system: Fix 'init'.
adds c39f3e1 gnu: diffoscope: Update to 105.
adds 1372754 gnu: fuse-exfat: Update to 1.3.0.
adds 5e9ce98 gnu: help2man: Add 1.47.8.
adds f4ee41c gnu: python-kivy: Update to 1.10.1
adds 28e32b1 gnu: clojure: Move from java to lisp.
adds df0a180 gnu: clojure: Remove 'remove-archives' snippet.
adds 8da9187 gnu: clojure: Refactor to ensure there's a single list of
libraries.
adds d0ad971 gnu: clojure: Use (guix build java-utils) to simplify
build phases.
adds 53f316a guix: Add clojure-utils.
adds df730f6 build-system: Add 'clojure-build-system'.
adds d2a659e gnu: Add clojure-instaparse.
adds c784ffa gnu: Add clojure-core-match.
adds eea5530 gnu: Add clojure-algo-generic.
adds 2cab1d4 gnu: Add clojure-tools-macro.
adds 5497214 gnu: Add clojure-algo-monads.
adds 4535a7b gnu: r-genomeinfodb: Update to 1.18.1.
adds e038819 gnu: r-msnbase: Update to 2.8.1.
adds c2e26dc gnu: r-ensembldb: Update to 2.6.2.
adds e21659c gnu: r-dimred: Update to 0.2.2.
adds e396b37 gnu: r-recipes: Update to 0.1.4.
adds 1659c5d gnu: r-ggpubr: Update to 0.2.
adds fba7dbe gnu: r-sjstats: Update to 0.17.2.
adds 278e0f6 gnu: r-ggeffects: Update to 0.7.0.
adds 749872a gnu: r-biocmanager: Update to 1.30.4.
adds 185663e gnu: r-openssl: Update to 1.1.
adds 0adf04a gnu: r-mclust: Update to 5.4.2.
adds 4db7184 gnu: r-shinyfiles: Update to 0.7.2.
adds 887437e gnu: git-when-merged: Fix license.
adds c3276db gnu: Add autotalent.
adds cc661cb gnu: xonotic: Symlink to xonotic data instead of copying
into xonotic.
adds fb525bf gnu: z3: Fetch source using git.
adds 4a4f3e7 gnu: z3: Update to 4.8.1.
adds 89d88b8 gnu: python-natsort: Update to 5.4.1.
adds ff43d95 gnu: python-joblib: Update to 0.13.0.
adds 352401e gnu: python-joblib: Update home page.
adds 7882cc5 gnu: fluidsynth: Update to 2.0.2.
adds 30f0fef gnu: libwebp: Update to 1.0.1.
adds 9acfe27 gnu: Add missing patch to local.mk.
new 4f70db9 Merge branch 'master' into core-updates
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
Makefile.am | 2 +
config-daemon.ac | 4 +-
doc/contributing.texi | 3 +-
doc/guix.texi | 81 +-
gnu/bootloader/extlinux.scm | 6 +-
gnu/bootloader/grub.scm | 104 +-
gnu/bootloader/u-boot.scm | 5 -
gnu/build/activation.scm | 17 +-
gnu/local.mk | 6 +
gnu/packages/algebra.scm | 36 +-
gnu/packages/antivirus.scm | 156 ++
gnu/packages/audio.scm | 122 +-
gnu/packages/bioinformatics.scm | 111 +-
gnu/packages/bootloaders.scm | 6 +-
gnu/packages/cran.scm | 24 +-
gnu/packages/emacs.scm | 6 +-
gnu/packages/game-development.scm | 4 +-
gnu/packages/games.scm | 4 +-
gnu/packages/gl.scm | 3 +-
gnu/packages/guile.scm | 6 +-
gnu/packages/image.scm | 4 +-
gnu/packages/java.scm | 145 --
gnu/packages/linux.scm | 16 +-
gnu/packages/lisp.scm | 276 ++-
gnu/packages/llvm.scm | 35 +-
gnu/packages/machine-learning.scm | 5 +-
gnu/packages/man.scm | 14 +-
gnu/packages/maths.scm | 127 +-
gnu/packages/mpi.scm | 42 +
gnu/packages/multiprecision.scm | 66 +
gnu/packages/ocaml.scm | 2328 ++++++++++++++------
gnu/packages/package-management.scm | 7 +-
gnu/packages/patches/clamav-config-llvm-libs.patch | 14 +
.../patches/clamav-system-tomsfastmath.patch | 102 +
.../patches/emacs-realgud-fix-configure-ac.patch | 27 +
...ml-bisect-fix-camlp4-in-another-directory.patch | 246 ++-
gnu/packages/patches/tomsfastmath-constness.patch | 76 +
gnu/packages/python.scm | 73 +-
gnu/packages/simulation.scm | 490 +++-
gnu/packages/statistics.scm | 8 +-
gnu/packages/version-control.scm | 52 +
gnu/packages/web.scm | 4 +-
gnu/system.scm | 166 +-
gnu/system/linux-initrd.scm | 13 +-
gnu/system/vm.scm | 210 +-
gnu/tests/base.scm | 11 +-
guix/build-system/clojure.scm | 195 ++
guix/build-system/ocaml.scm | 24 +-
guix/build/clojure-build-system.scm | 110 +
guix/build/clojure-utils.scm | 265 +++
guix/build/ocaml-build-system.scm | 45 +-
guix/download.scm | 35 +-
guix/progress.scm | 28 +-
guix/scripts/system.scm | 115 +-
nix/libstore/local-store.cc | 17 +-
nix/local.mk | 7 +-
nix/nix-daemon/guix-daemon.cc | 12 -
.../{guix-authenticate.in => authenticate.in} | 0
58 files changed, 4688 insertions(+), 1428 deletions(-)
create mode 100644 gnu/packages/antivirus.scm
create mode 100644 gnu/packages/patches/clamav-config-llvm-libs.patch
create mode 100644 gnu/packages/patches/clamav-system-tomsfastmath.patch
create mode 100644 gnu/packages/patches/emacs-realgud-fix-configure-ac.patch
create mode 100644 gnu/packages/patches/tomsfastmath-constness.patch
create mode 100644 guix/build-system/clojure.scm
create mode 100644 guix/build/clojure-build-system.scm
create mode 100644 guix/build/clojure-utils.scm
rename nix/scripts/{guix-authenticate.in => authenticate.in} (100%)
- branch core-updates updated (2d54685 -> 4f70db9),
Marius Bakke <=