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86/215: gnu: r-gwascat: Update to 2.16.0.
From: |
guix-commits |
Subject: |
86/215: gnu: r-gwascat: Update to 2.16.0. |
Date: |
Sun, 5 May 2019 18:15:45 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 1b454f9f691a5b317e786b61bd019df436421e7a
Author: Ricardo Wurmus <address@hidden>
Date: Sun May 5 23:46:28 2019 +0200
gnu: r-gwascat: Update to 2.16.0.
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.16.0.
[propagated-inputs]: Remove r-annotationhub, r-ggbio, r-ggplot2,
r-gqtlstats,
r-graph, r-gviz, r-snpstats, r-summarizedexperiment, and
r-variantannotation.
---
gnu/packages/bioinformatics.scm | 15 +++------------
1 file changed, 3 insertions(+), 12 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ad94faf..1139abb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10302,36 +10302,27 @@ with your data.")
(define-public r-gwascat
(package
(name "r-gwascat")
- (version "2.14.0")
+ (version "2.16.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "gwascat" version))
(sha256
(base32
- "1fnyjydhicq4ayrv0lqjv48h9bd72h40s6l82g1h2ng0icwz38g0"))))
+ "0akb36mrybmxbb1bc9kgxbnj3cdypfylj3yzrmhjwqxml03mg61i"))))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
- ("r-annotationhub" ,r-annotationhub)
("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
- ("r-ggbio" ,r-ggbio)
- ("r-ggplot2" ,r-ggplot2)
- ("r-gqtlstats" ,r-gqtlstats)
- ("r-graph" ,r-graph)
- ("r-gviz" ,r-gviz)
("r-homo-sapiens" ,r-homo-sapiens)
("r-iranges" ,r-iranges)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
- ("r-s4vectors" ,r-s4vectors)
- ("r-snpstats" ,r-snpstats)
- ("r-summarizedexperiment" ,r-summarizedexperiment)
- ("r-variantannotation" ,r-variantannotation)))
+ ("r-s4vectors" ,r-s4vectors)))
(home-page "https://bioconductor.org/packages/gwascat")
(synopsis "Tools for data in the EMBL-EBI GWAS catalog")
(description
- 49/215: gnu: r-genomation: Update to 1.16.0., (continued)
- 49/215: gnu: r-genomation: Update to 1.16.0., guix-commits, 2019/05/05
- 65/215: gnu: r-affy: Update to 1.62.0., guix-commits, 2019/05/05
- 67/215: gnu: r-mzid: Update to 1.22.0., guix-commits, 2019/05/05
- 74/215: gnu: r-interactivedisplaybase: Update to 1.22.0., guix-commits, 2019/05/05
- 83/215: gnu: r-hitc: Update to 1.28.0., guix-commits, 2019/05/05
- 81/215: gnu: r-rhdf5lib: Update to 1.6.0., guix-commits, 2019/05/05
- 90/215: gnu: r-erma: Update to 1.0.0., guix-commits, 2019/05/05
- 97/215: gnu: r-dirichletmultinomial: Update to 1.26.0., guix-commits, 2019/05/05
- 94/215: gnu: r-biovizbase: Update to 1.32.0., guix-commits, 2019/05/05
- 88/215: gnu: r-gqtlstats: Update to 1.16.0., guix-commits, 2019/05/05
- 86/215: gnu: r-gwascat: Update to 2.16.0.,
guix-commits <=
- 102/215: gnu: r-fastseg: Update to 1.30.0., guix-commits, 2019/05/05
- 100/215: gnu: r-gage: Update to 2.34.0., guix-commits, 2019/05/05
- 85/215: gnu: r-sushi: Update to 1.22.0., guix-commits, 2019/05/05
- 98/215: gnu: r-complexheatmap: Update to 2.0.0., guix-commits, 2019/05/05
- 51/215: gnu: r-motifrg: Update to 1.28.0., guix-commits, 2019/05/05
- 56/215: gnu: r-tximport: Update to 1.12.0., guix-commits, 2019/05/05
- 58/215: gnu: r-annotationfilter: Update to 1.8.0., guix-commits, 2019/05/05
- 59/215: gnu: r-chipseq: Update to 1.34.0., guix-commits, 2019/05/05
- 62/215: gnu: r-protgenerics: Update to 1.16.0., guix-commits, 2019/05/05
- 60/215: gnu: r-copywriter: Update to 2.16.0., guix-commits, 2019/05/05