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branch core-updates updated (20e4ee1 -> 6cb1ef9)
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From: |
guix-commits |
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Subject: |
branch core-updates updated (20e4ee1 -> 6cb1ef9) |
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Date: |
Thu, 20 Jun 2019 17:51:21 -0400 (EDT) |
mbakke pushed a change to branch core-updates
in repository guix.
from 20e4ee1 gnu: gcc-mesboot-wrapper: Fix 'version' field.
adds 30e12b9 Merge branch 'master' into staging
adds d4721ff Merge branch 'master' into staging
adds 4bed3b1 gnu: mesa: Disable failing test on i686.
adds 69ecd66 Merge branch 'master' into staging
adds 58bf51b Merge branch 'master' into staging
adds 2916deb gnu: perl-io-socket-ssl: Update to 2.066.
adds 2a9d89a gnu: gstreamer: Skip failing test on 32-bit systems.
adds 5f9f2c8 build-system/haskell: Fix Haddock phase docstring.
adds ed8d3f3 build-system/haskell: Generate Setup.hs if needed.
adds 830a0fe gnu: cups-filters: Update to 1.25.0.
adds 14b5319 gnu: libsigc++: Update to 2.10.2.
adds 16c38e2 gnu: imagemagick: Update to 6.9.10-49.
adds 753eb41 gnu: python-markupsafe: Update to 1.1.1.
adds 950c3a2 gnu: python-mako: Update to 1.0.12.
adds bbeeeb1 gnu: Sphinx: Update to 2.1.1.
adds 4e8284f gnu: speexdsp: Update to 1.2.0.
adds d95503a gnu: libtirpc: Update to 1.1.4.
adds fd641a2 gnu: libnsl: Do not use unstable tarball.
adds af847bd gnu: xorg-server-for-tests: Update to 1.20.5.
adds eed8108 gnu: python-pygments: Update to 2.4.2.
adds 4e24e44 gnu: python-freezegun: Update to 0.3.12.
adds 9325341 gnu: python-babel: Update to 2.7.0.
adds 71c08ee gnu: python-pytz: Update to 2019.1.
adds 3745909 gnu: Add ri-li.
adds f388f4a Merge branch 'staging'
adds 9062fde gnu: parcimonie: Update source and home-page.
adds c56a65a gnu: Add emacs-xtest.
adds 9989e06 gnu: Add emacs-elfeed-org.
adds fdcd50b gnu: Add emacs-restart-emacs.
adds 4df1d31 gnu: Add emacs-mixed-pitch.
adds 6bb5a7e gnu: Add emacs-solaire-mode.
adds a3abc3f gnu: perl-db-file: Update to 1.852.
adds 15f836e gnu: perl-canary-stability: Update to 2013.
adds 1682368 gnu: perl-yaml-libyaml: Update to 0.78.
adds 1aa2c25 gnu: ikiwiki: Update to 3.20190228.
adds 576cb39 gnu: Add emacs-org-noter
adds 30825c4 gnu: emacs-org-noter: Tweak.
adds ca45da9 import: hackage: Handle Hackage revisions.
adds 54200da gnu: ungoogled-chromium: Update to 75.0.3770.90-0.5d8abc3
[fixes CVE-2019-5842].
adds 71bfbe9 gnu: whois: Update to 5.4.3.
adds e23b6a6 gnu: sway: Hardcode path to swaybg.
adds f063f0e doc: Fix typo.
adds bc70516 gnu: Remove r-loomr.
adds 4c7e8c2 gnu: Add benchmark.
adds c7fbf61 gnu: Remove leftover patch.
adds a60dbad Merge branch 'staging'
adds 2408736 gnu: emacs-desktop-environment: Update to 0.2.2.
adds ddd401d gnu: swayidle: Add elogind support.
adds f3d7970 services: Remove unneeded imports that led to cycles.
adds b3f02ca gnu: libmicrohttpd: Update to 0.9.64.
adds d2de780 gnu: dico: Update to 2.9.
adds 02dad49 gnu: gengetopt: Update to 2.23.
adds 25cb591 gnu: wget: Update to 1.20.3.
adds a59902f gnu: rush: Update to 1.9.
adds 494a8cd gnu: units: Update to 2.19.
adds f5be510 services: Add usb-modeswitch-service-type.
adds 7dbeb5a services: Include USB_ModeSwitch in %desktop-services.
adds 121d9d1 gnu: Add spdlog.
adds 7a1d6a7 gnu: Add waybar.
adds 466595e gnu: linux-libre@4.14: Update to 4.14.126.
adds fc6290f gnu: linux-libre@4.19: Update to 4.19.51.
adds 86c05c4 gnu: linux-libre: Update to 5.1.10.
adds 8bae6c7 gnu: keepassxc: Update to 2.4.3.
adds 4fce1ff gnu: Add font-anonymous-pro-minus.
adds fa67073 gnu: dstat: Fix Python 3 deprecation warning.
adds 10a3297 gnu: dstat: Add two patches, fix two bugs.
adds 914bba2 gnu: docker-compose: Add required Python dependencies.
adds 562a2a4 gnu: Add freeorion
adds 8fadac9 gnu: suil: Update to 0.10.4.
adds 3abc9cc gnu: knot: Update to 2.8.2.
adds 935e4b3 gnu: nsd: Update to 4.2.0.
adds e605820 gnu: radare2: Don't use NAME in source URI.
adds a157fb2 gnu: radare2: Download over HTTPS.
adds 5863741 gnu: youtube-viewer: Refer to youtube-dl.
adds d1a3a8e gnu: guile-picture-language: Update to 0.0.1-1-91d10c9.
adds bb6c8f2 gnu: guile-gi: Update to 0.0.2.
adds e0cd8f7 gnu: r-extradistr: Update to 1.8.11.
adds 45dcc89 gnu: r-sjmisc: Update to 2.8.0.
adds 89afd03 gnu: r-abcrf: Update to 1.8.
adds a7794b7 gnu: r-emmeans: Update to 1.3.5.
adds 935c653 gnu: r-rspectra: Update to 0.15-0.
adds 5cc8965 gnu: r-tractor-base: Update to 3.3.2.
adds 776c62d gnu: r-nor1mix: Update to 1.3-0.
adds 663a50e gnu: r-deldir: Update to 0.1-21.
adds 9fea25c gnu: r-polspline: Update to 1.1.15.
adds 18242e4 gnu: r-servr: Update to 0.14.
adds 4661eff gnu: r-ggplot2: Update to 3.2.0.
adds 24868ae gnu: r-formatr: Update to 1.7.
adds e89e4bb gnu: r-mime: Update to 0.7.
adds 074dd18 gnu: r-rcpparmadillo: Update to 0.9.500.2.0.
adds 0f4182a gnu: r-dt: Update to 0.7.
adds fd61e9c gnu: r-r-utils: Update to 2.9.0.
adds 7bbd06e gnu: r-systempiper: Update to 1.18.1.
adds 6dc3c58 gnu: r-tximport: Update to 1.12.1.
adds 42df44f gnu: r-seurat: Update to 3.0.2.
adds 932a6c4 gnu: r-rhisat2: Update to 1.0.3.
adds 3c33931 gnu: Upgrade emacs-default-encrypt to 4.4.
adds 0bc010d gnu: Add emacs-extend-smime.
adds c9f0331 gnu: xpra: Update to 2.5.2.
adds ee0b473 gnu: toybox: Don't install files to usr.
adds 9e3e80b gnu: cava: Don't install files to usr.
adds 55350f8 gnu: cmst: Don't install files to usr.
adds bf95a14 gnu: gap: Update to 4.10.1.
adds 123b9c0 gnu: open-zwave: Unbundle hidapi.
adds ed504ca vm: 'system-docker-image' builds in a UTF-8 locale.
adds 73eacca gnu: kakoune: Remove dependency on boost.
adds f434664 gnu: oil-shell: Update to 0.6pre22.
adds 5cfc163 gnu: python-scipy: Update to 1.2.2.
adds de2d14f gnu: waybar: Add optional dependencies.
adds 505459d gnu: busybox: Don't install to usr.
adds 20caeea gnu: Add cliquer.
adds 1e1a65a gnu: python-cypari2: Update to 2.1.1.
adds 9f60652 gnu: Add edge-addition-planarity-suite.
adds 7658904 gnu: Fix freeorion build.
adds f455d99 gnu: edge-addition-planarity-suite: Move to the (gnu
packages graph) module.
adds bf473f0 gnu: Add rw.
adds a6f2ced gnu: Add tbsp.
adds 27d6d24 gnu: python-scikit-learn: Update to 0.20.3.
adds c853573 gnu: python-flask-script: Fix tests.
adds 1539156 doc: Fix typo.
adds 972ef8f gnu: Add libbraiding.
adds 4c32f11 gnu: Add libhomfly.
adds 46dc940 gnu: Add mako.
adds 0ab5e91 gnu: rust: Update to 1.35.0.
adds 8dec0cd gnu: radare2: Update to 3.5.1.
adds 23414a8 gnu: mpd-mpc: Update to 0.32.
adds 6807d6a gnu: hcxtools: Update to 5.1.6.
adds a0f2c94 gnu: hcxdumptool: Update to 5.1.5.
adds 55c0830 gnu: gandi.cli: Update to 1.5.
adds ecd5c20 gnu: libnftnl: Update to 1.1.3.
adds f2c119a gnu: rtv: Update to 1.27.0.
adds 614f7df gnu: mercurial: Update to 5.0.1.
adds b37fa81 gnu: eternalterminal: Update to 5.1.10.
adds 90d537f gnu: gaupol: Update to 1.6.
adds 1e609b7 gnu: stunnel: Update to 5.55.
adds dede052 gnu: Add python-backcall.
adds 0f37894 gnu: python2-ipykernel: Split from python-ipykernel.
adds 82110de gnu: python-ipykernel: Update to 5.1.1.
adds 8b5f756 gnu: python-ipython: Update to 7.5.0
adds 55dae98 gnu: Add python-matplotlib-venn.
adds a32e3b9 gnu: gemmlowp-for-tensorflow: Use SSE2.
adds 5c7f878 tests: Avoid 'delete-paths' calls for
'derivation-prerequisites-to-build'.
adds 9353b19 guix build: '--log-file' looks for build logs of
equivalent derivations.
adds b95ccba doc: Replace invalid uses of @var with @code.
adds 0c21281 gnu: Add python-slurm-magic.
adds e6e2f4a gnu: Add emacs-gruvbox-theme
adds 2e8c912 gnu: aircrack-ng: Update to 1.5.2.
adds d60b064 gnu: Add python-iml.
adds 4088ae4 gnu: python-on-guile: Update to 0.1.0-2.058c596.
adds cc908fd gnu: Remove hydra.
adds f0fbb31 gnu: Add givaro.
adds 4bf9cb4 gnu: Add fflas-ffpack.
adds a612f86 gnu: Add linbox.
adds 80a70da gnu: givaro: Add version 4.0.4.
adds 9fafb0d gnu: fflas-ffpack: Add version 2.3.2.
adds e27ae2d gnu: linbox: Add version 1.5.2.
adds cb13618 gnu: python2: Add 'cpe-name' property.
adds b84c4cd linux-container: Remove networking service when network
is shared with host.
adds cbc28ac gnu: linux-libre@4.4: Update to 4.4.182.
adds 6bb60ba gnu: linux-libre@4.9: Update to 4.9.182.
adds 4862957 gnu: linux-libre@4.14: Update to 4.14.127.
adds 999ab38 gnu: linux-libre@4.19: Update to 4.19.52.
adds 5f7367c gnu: linux-libre: Update to 5.1.11.
adds bf5929c tests: Fix opensmtpd test.
adds 5d36753 gnu: python-s3transfer: Update to 0.2.0.
adds 7bcf827 gnu: python-botocore: Update to 1.12.149.
adds d93ad19 gnu: Add python-keras-applications.
adds 4abc506 gnu: Add python-keras-preprocessing.
adds 90afa80 gnu: Add python-pytest-timeout.
adds f1765b5 gnu: Add python-keras.
adds 75b803f gnu: libfilezilla: Update to 0.16.0.
adds 68c138f gnu: filezilla: Update to 3.42.1.
adds a6dc3cc gnu: ansible: Update to 2.8.1.
adds bb3dc80 gnu: shadow: Update to 4.7.
adds 1f6dd7e gnu: shadow: Update home page.
adds 2dcde3c gnu: perl-xml-sax: Update to 1.02.
adds 903bc26 gnu: mpd: Update to 0.21.10.
adds 76472ed gnu: notmuch: Update to 0.29.1.
adds c8a67f1 gnu: nano: Update to 4.3.
adds f58b10c gnu: balsa: Update to 2.5.7.
adds 538230c gnu: python-gmpy2: Update to 2.1.0b1.
adds 3923e9d gnu: Add pynac.
adds 01822e3 gnu: Add zn_poly.
adds 7c5f623 gnu: Add gf2x.
adds 0c842e3 gnu: Add ratpoints.
adds 74247b8 gnu: Add python-pandocfilters.
adds 2ef22a9 derivations: Add 'derivation-input-derivation'.
adds aad086d grafts: Avoid 'query-valid-derivers' RPC.
adds a7a3182 gnu: Add numix-theme.
adds 8785a71 gnu: emacs-unpackaged-el: Add patch for missing require
statement.
adds 3f9a027 gnu: Add crispy-doom.
adds 37edfb0 gnu: Add m4ri.
adds a1dcaac gnu: Add brial.
adds 80ee7c4 gnu: zn_poly: Rename to zn-poly, according to our naming
conventions.
adds c5c51bd gnu: bind: Update to 9.14.3 [fixes CVE-2019-6471].
adds 5543d3b gnu: spdlog: Clarify license.
adds ab39838 gnu: Move ratpoints into a different module.
adds 059e4c9 gnu: Add libgd.
adds a42cb6f gnu: zathura: Install icons.
adds 75a73bb gnu: Add symmetrica.
adds f7dbf18 services: Fix typo in (gnu services mail) exports.
adds 1de48e8 gnu: fplll: Update to 5.2.1.
adds 25cbaa9 gnu: Add python-fpylll.
adds 9553a41 gnu: weechat: update to 2.5
adds 6cbedbd gnu: Add m4rie.
adds 66c67e7 gnu: Add eclib.
adds 197ebc3 gnu: Add lrcalc.
adds e2ab228 Revert "gnu: Add libgd."
adds 8e590c8 gnu: python2-jupyter-console: Split from
python-jupyter-console.
adds becb9cb gnu: python-jupyter-console: Update to 6.0.0.
adds c050f18 gnu: guile: Add 2.2.5.
adds 3149c00 utils: canonical-newline-port: Fix handling of carriage
return at buffer end.
adds b46a9b9 import: hackage: Add two expected failing test cases.
adds 7cb44fb gnu: ncbi-vdb: Update to 2.9.6.
adds 20874b7 gnu: sra-tools: Update to 2.9.6.
adds 30adfd3 gnu: ngs-sdk: Update to 2.9.6.
adds ace8e26 services: opensmtpd: Extend the PAM service.
adds 2643347 gnu: Add ppl.
adds eacf298 gnu: Add iml.
adds 78407a2 licenses: Add Historical Permission Notice and Disclaimer
license
adds 28618b0 gnu: pigx-rnaseq: Update to 0.0.7.
adds 377bd15 gnu: dbus: Fix CVE-2019-12749.
adds bd9d720 gnu: python-unidecode: Update to 1.1.0.
adds b549a05 gnu: Use HTTPS for sphinx-doc.org.
adds 3df7b15 gnu: ungoogled-chromium: Install icons.
adds e4386b3 gnu: openh264: Update to 2.0.0.
adds cee8358 gnu: ungoogled-chromium: Update to
75.0.3770.100-0.5d8abc3.
adds 0605d93 gnu: samba: Update to 4.10.5 [fixes CVE-2019-12435,
CVE-2019-12436].
adds 9a2e5fe gnu: ungoogled-chromium: Disable parallel build.
adds 651478a Merge branch 'master' into staging
adds 010689e gnu: python-sphinx: Update to 2.1.2.
new 6cb1ef9 Merge branch 'staging' into core-updates
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
doc/guix.texi | 90 +++-
gnu/local.mk | 19 +-
gnu/packages/admin.scm | 21 +-
gnu/packages/algebra.scm | 586 +++++++++++++++++++--
gnu/packages/audio.scm | 18 +-
gnu/packages/benchmark.scm | 28 +
gnu/packages/bioconductor.scm | 4 +-
gnu/packages/bioinformatics.scm | 108 ++--
gnu/packages/busybox.scm | 16 +-
gnu/packages/check.scm | 30 +-
gnu/packages/chromium.scm | 38 +-
gnu/packages/ci.scm | 141 -----
gnu/packages/connman.scm | 15 +-
gnu/packages/cran.scm | 46 +-
gnu/packages/cups.scm | 4 +-
gnu/packages/databases.scm | 5 +-
gnu/packages/dico.scm | 4 +-
gnu/packages/dns.scm | 12 +-
gnu/packages/docker.scm | 5 +-
gnu/packages/emacs-xyz.scm | 242 ++++++++-
gnu/packages/engineering.scm | 12 +-
gnu/packages/fonts.scm | 22 +
gnu/packages/ftp.scm | 9 +-
gnu/packages/games.scm | 175 ++++++
gnu/packages/gl.scm | 9 +
gnu/packages/glib.scm | 13 +-
gnu/packages/gnome.scm | 33 ++
gnu/packages/gnunet.scm | 4 +-
gnu/packages/gnupg.scm | 6 +-
gnu/packages/graph.scm | 54 ++
gnu/packages/gstreamer.scm | 15 +-
gnu/packages/guile-xyz.scm | 99 ++--
gnu/packages/guile.scm | 12 +
gnu/packages/haskell.scm | 42 --
gnu/packages/imagemagick.scm | 4 +-
gnu/packages/irc.scm | 6 +-
gnu/packages/linux.scm | 24 +-
gnu/packages/logging.scm | 30 ++
gnu/packages/machine-learning.scm | 168 +++++-
gnu/packages/mail.scm | 15 +-
gnu/packages/maths.scm | 45 +-
gnu/packages/mpd.scm | 8 +-
gnu/packages/nano.scm | 10 +-
gnu/packages/networking.scm | 21 +-
gnu/packages/onc-rpc.scm | 16 +-
gnu/packages/parallel.scm | 53 +-
gnu/packages/password-utils.scm | 6 +-
.../patches/benchmark-unbundle-googletest.patch | 69 +++
gnu/packages/patches/dbus-CVE-2019-12749.patch | 116 ++++
.../dstat-fix-crash-when-specifying-delay.patch | 48 ++
.../patches/dstat-skip-devices-without-io.patch | 32 ++
gnu/packages/patches/emacs-unpackaged-req.patch | 24 +
.../patches/inkscape-poppler-compat3.patch | 499 ------------------
gnu/packages/patches/open-zwave-hidapi.patch | 15 +
.../patches/ratpoints-sturm_and_rp_private.patch | 194 +++++++
gnu/packages/patches/ri-li-modernize_cpp.patch | 391 ++++++++++++++
gnu/packages/patches/symmetrica-bruch.patch | 38 ++
gnu/packages/patches/symmetrica-int32.patch | 37 ++
.../patches/symmetrica-return_values.patch | 14 +
.../patches/symmetrica-sort_sum_rename.patch | 340 ++++++++++++
gnu/packages/pdf.scm | 4 +
gnu/packages/perl.scm | 9 +-
gnu/packages/popt.scm | 13 +-
gnu/packages/python-web.scm | 19 +-
gnu/packages/python-xyz.scm | 500 +++++++++++++-----
gnu/packages/python.scm | 1 +
gnu/packages/rush.scm | 4 +-
gnu/packages/rust.scm | 22 +-
gnu/packages/sagemath.scm | 284 +++++++++-
gnu/packages/samba.scm | 4 +-
gnu/packages/shells.scm | 4 +-
gnu/packages/sphinx.scm | 10 +-
gnu/packages/statistics.scm | 25 +-
gnu/packages/syndication.scm | 7 +-
gnu/packages/terminals.scm | 5 +-
gnu/packages/text-editors.scm | 3 +-
gnu/packages/textutils.scm | 25 +
gnu/packages/time.scm | 4 +-
gnu/packages/version-control.scm | 4 +-
gnu/packages/video.scm | 22 +-
gnu/packages/web.scm | 27 +-
gnu/packages/wget.scm | 4 +-
gnu/packages/wm.scm | 92 +++-
gnu/packages/xiph.scm | 4 +-
gnu/packages/xml.scm | 5 +-
gnu/packages/xorg.scm | 15 +-
gnu/packages/zwave.scm | 9 +
gnu/services/admin.scm | 3 +-
gnu/services/desktop.scm | 1 +
gnu/services/mail.scm | 8 +-
gnu/services/mcron.scm | 1 -
gnu/services/networking.scm | 104 ++++
gnu/system/linux-container.scm | 29 +-
gnu/system/vm.scm | 5 +
gnu/tests/mail.scm | 6 +-
guix/build/haskell-build-system.scm | 14 +-
guix/derivations.scm | 9 +-
guix/grafts.scm | 67 ++-
guix/import/cabal.scm | 7 +-
guix/import/hackage.scm | 62 ++-
guix/licenses.scm | 6 +
guix/scripts/build.scm | 5 +-
guix/utils.scm | 6 +-
tests/derivations.scm | 15 +-
tests/hackage.scm | 97 +++-
tests/utils.scm | 6 +
106 files changed, 4399 insertions(+), 1337 deletions(-)
create mode 100644 gnu/packages/patches/benchmark-unbundle-googletest.patch
create mode 100644 gnu/packages/patches/dbus-CVE-2019-12749.patch
create mode 100644
gnu/packages/patches/dstat-fix-crash-when-specifying-delay.patch
create mode 100644 gnu/packages/patches/dstat-skip-devices-without-io.patch
create mode 100644 gnu/packages/patches/emacs-unpackaged-req.patch
delete mode 100644 gnu/packages/patches/inkscape-poppler-compat3.patch
create mode 100644 gnu/packages/patches/open-zwave-hidapi.patch
create mode 100644 gnu/packages/patches/ratpoints-sturm_and_rp_private.patch
create mode 100644 gnu/packages/patches/ri-li-modernize_cpp.patch
create mode 100644 gnu/packages/patches/symmetrica-bruch.patch
create mode 100644 gnu/packages/patches/symmetrica-int32.patch
create mode 100644 gnu/packages/patches/symmetrica-return_values.patch
create mode 100644 gnu/packages/patches/symmetrica-sort_sum_rename.patch
- branch core-updates updated (20e4ee1 -> 6cb1ef9),
guix-commits <=