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05/07: gnu: Add fastahack.
From: |
guix-commits |
Subject: |
05/07: gnu: Add fastahack. |
Date: |
Thu, 8 Aug 2019 08:19:12 -0400 (EDT) |
efraim pushed a commit to branch master
in repository guix.
commit 7d71557d4d3ca5bdd33eb8c9bdf0cd2aba624554
Author: Pierre Neidhardt <address@hidden>
Date: Sat May 18 19:26:38 2019 +0200
gnu: Add fastahack.
* gnu/packages/bioinformatics.scm (fastahack): New variable.
---
gnu/packages/bioinformatics.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a3c83f7..4dae220 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14962,3 +14962,36 @@ combinatorial configurations.\", G. Ehrlich - Journal
of the ACM (JACM),
(description "A tiny C library for managing SOM (Self-Organizing Maps)
neural networks.")
(license license:gpl3))))
+
+(define-public fastahack
+ (let ((commit "c68cebb4f2e5d5d2b70cf08fbdf1944e9ab2c2dd"))
+ (package
+ (name "fastahack")
+ (version (git-version "0.0.0" "1" commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ekg/fastahack/")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0hfdv67l9g611i2ck4l92pd6ygmsp9g1ph4zx1ni7qkpsikf0l19"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:tests? #f ; Unclear how to run tests:
https://github.com/ekg/fastahack/issues/15
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure) ; There is no configure phase.
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
+ (install-file "fastahack" bin))
+ #t)))))
+ (home-page "https://github.com/ekg/fastahack")
+ (synopsis "Indexing and sequence extraction from FASTA files")
+ (description "Fastahack is a small application for indexing and
+extracting sequences and subsequences from FASTA files. The included library
+provides a FASTA reader and indexer that can be embedded into applications
+which would benefit from directly reading subsequences from FASTA files. The
+library automatically handles index file generation and use.")
+ (license (list license:expat license:gpl2)))))
- branch master updated (8378c87 -> 173e046), guix-commits, 2019/08/08
- 06/07: gnu: Add vcflib., guix-commits, 2019/08/08
- 03/07: gnu: Add multichoose., guix-commits, 2019/08/08
- 07/07: gnu: Add freebayes., guix-commits, 2019/08/08
- 05/07: gnu: Add fastahack.,
guix-commits <=
- 01/07: gnu: Add tabixpp., guix-commits, 2019/08/08
- 02/07: gnu: Add smithwaterman., guix-commits, 2019/08/08
- 04/07: gnu: Add fsom., guix-commits, 2019/08/08