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01/02: gnu: Add r-txdb-celegans-ucsc-ce6-ensgene.
From: |
guix-commits |
Subject: |
01/02: gnu: Add r-txdb-celegans-ucsc-ce6-ensgene. |
Date: |
Fri, 6 Sep 2019 09:00:59 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 7cd446fd3f1d3b5dce4800d1daba2fa31a07f1b2
Author: Ricardo Wurmus <address@hidden>
Date: Thu Sep 5 23:33:52 2019 +0200
gnu: Add r-txdb-celegans-ucsc-ce6-ensgene.
* gnu/packages/bioconductor.scm (r-txdb-celegans-ucsc-ce6-ensgene): New
variable.
---
gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3ba5415..37cd51d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -708,6 +708,31 @@ the TxDb object of Mouse data as provided by UCSC (mm10,
December 2011)
based on the knownGene track.")
(license license:artistic2.0)))
+(define-public r-txdb-celegans-ucsc-ce6-ensgene
+ (package
+ (name "r-txdb-celegans-ucsc-ce6-ensgene")
+ (version "3.2.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "TxDb.Celegans.UCSC.ce6.ensGene"
+ version 'annotation))
+ (sha256
+ (base32
+ "1sgppva33cdy4isj2is8mfalj5gmmkpbkq9w1d83a4agcq31mi90"))))
+ (properties
+ `((upstream-name . "TxDb.Celegans.UCSC.ce6.ensGene")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-genomicfeatures" ,r-genomicfeatures)))
+ (home-page
"https://bioconductor.org/packages/TxDb.Celegans.UCSC.ce6.ensGene/")
+ (synopsis "Annotation package for C elegans TxDb objects")
+ (description
+ "This package exposes a C elegans annotation database generated from UCSC
+by exposing these as TxDb objects.")
+ (license license:artistic2.0)))
+
(define-public r-fdb-infiniummethylation-hg19
(package
(name "r-fdb-infiniummethylation-hg19")