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branch staging updated (6d460e8 -> 0897ad7)
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From: |
guix-commits |
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Subject: |
branch staging updated (6d460e8 -> 0897ad7) |
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Date: |
Wed, 27 Nov 2019 19:28:39 -0500 (EST) |
mbakke pushed a change to branch staging
in repository guix.
from 6d460e8 gnu: Qt: Update to 5.12.6 LTS.
adds 7454078 gnu: python-lazy-object-proxy: Update to 1.4.3.
adds b448e40 gnu: ruby-command-line-reporter: Update to 4.0.1.
adds 8280676 gnu: gthumb: Update to 3.8.2.
adds 0645e72 gnu: r-rms: Update to 5.1-4.
adds 1d4f001 gnu: ruby-prawn-manual-builder: Update to 0.3.1.
adds ec2014d gnu: r-sjstats: Update to 0.17.7.
adds 2f6a158 gnu: libpwquality: Don't use NAME in source URI.
adds 6bd856d gnu: libpwquality: Update to 1.4.2.
adds f64d79e gnu: libplist: Update to 2.1.0.
adds 2414997 gnu: libbytesize: Update to 2.1.
adds 4e2e84d gnu: man-pages: Update to 5.04.
adds 4f5234b substitute: Don't fetch /nix-cache-info.
adds 732c96f daemon: GC displays how much it has collected.
adds c0e9d47 import: texlive: Handle multi-license packages.
adds d76df98 environment: Document that '--manifest' can be repeated.
adds ce30a0e profiles: Add 'concatenate-manifests'.
adds bf9206d package: Allow multiple '--manifest' options.
adds ca541f9 pack: Allow multiple '--manifest' options.
adds cf87919 gnu: libseccomp: Fix build on AArch64.
adds 74f1718 utils: Use target-aarch64? and target-arm? helpers.
adds 2608417 build: vm: Fix arm32 support.
adds 1ee72bb system: vm: Add arm64 support.
adds ee4db14 gnu: php: Update to 7.3.12.
adds a608666 gnu: Add xsane.
adds 61abb11 gnu: Register xsane patches.
adds 99b1060 gnu: xsane: Fix snprintf buffer length.
adds 4c7ca5d gnu: bear: Update to 2.4.2.
adds 8717fb8 gnu: polyml: Update to 5.8.
adds 116787d gnu: polyml: Use HTTPS home page URI.
adds 4afb7dd gnu: simple-scan: Update to 3.34.2.
adds d34c6a2 gnu: hangups: Update to 0.4.10.
adds 520dc74 gnu: ocaml-odoc: Update to 1.4.2.
adds 9a3d421 gnu: r-shinyfiles: Update to 0.7.5.
adds 36ca789 gnu: r-algdesign: Update to 1.1-7.3.1.
adds 8f35d63 gnu: r-car: Update to 3.0-5.
adds 19b85d0 gnu: r-cardata: Update to 3.0-3.
adds 33ac190 gnu: r-selectr: Update to 0.4-2.
adds 3db9cbf gnu: r-desolve: Update to 1.25.
adds ec9a15c gnu: r-quadprog: Update to 1.5-8.
adds 748ae1c gnu: r-glmnet: Update to 3.0-1.
adds c843959 gnu: r-vgam: Update to 1.1-2.
adds e25d068 gnu: r-roxygen2: Update to 7.0.1.
adds b93a329 gnu: r-biocmanager: Update to 1.30.10.
adds f9ec89f gnu: Add srfi-64-driver.
adds f6bf4b2 gnu: Add guile-semver.
adds efafbc6 gnu: guile-next: Update to 2.9.5.
adds 1d48f1d gnu: guile-ssh: Remove redundant phase.
adds 7e90eb9 gnu: guile-ssh: Add "guile3.0-ssh" variant.
adds 63292fd gnu: perl-moox-late: Update to 0.016.
adds af6533d gnu: perl-apache-logformat-compiler: Update to 0.36.
adds 97610a6 gnu: python-whatever: Update to 0.6.
adds 2767beb gnu: perl-cairo: Update to 1.107.
adds 339bafa gnu: perl-indirect: Update to 0.39.
adds 63e633c gnu: perl-file-slurp: Update to 9999.28.
adds 74eee9f gnu: python-django-pipeline: Fix tests.
adds a91f4a7 gnu: perl-devel-stacktrace: Update to 2.04.
adds 5415f3f gnu: parallel: Update to 20191122.
adds 6f50c8a gnu: perl-datetime: Update to 1.51.
adds ea3e8fa gnu: perl-carp-assert-more: Update to 1.20.
adds 669bd43 gnu: perl-class-unload: Update to 0.11.
adds 9a40a62 gnu: perl-crypt-random-source: Update to 0.14.
adds e8f8637 gnu: perl-date-manip: Update to 6.78.
adds 1e8609f gnu: wxmaxima: Update to 19.11.1.
adds 5ce0aab gnu: Add ashuffle.
adds a3e5361 gnu: ashuffle: Fix typo.
adds 6035320 gnu: guile2.0-git: Fix compilation of libgit2.
adds 01c11ae gnu: guile-git: Add "guile3.0-git" variant.
adds d630d78 gnu: gnutls: Add "guile3.0-gnutls" variant.
adds d15e4b1 gnu: guile-sqlite3: Add "guile3.0-sqlite3" variant.
adds fde60bf tests: Use (ice-9 threads).
adds fed3632 compile: Adjust for Guile 2.9.5.
adds 959d908 gnu: ruby-useragent: Update to 0.16.10.
adds 9d1cf6d gnu: ruby-websocket-driver: Update to 0.7.1.
adds 2d2a236 gnu: ruby-progressbar: Update to 1.10.1.
adds d432682 gnu: ruby-simplecov: Update to 0.17.1.
adds 5dd10be gnu: ruby-oauth2: Update to 1.4.2.
adds 8c1e4a4 gnu: ruby-notiffany: Update to 0.1.3.
adds 60bc895 gnu: ruby-mimemagic: Update to 0.3.3.
adds 37b23e4 gnu: ruby-jaro-winkler: Update to 1.5.4.
adds ac87ffb gnu: vte: Don't use NAME in source URI.
adds 68c4747 gnu: vte: Update to 0.58.3.
adds 82de17d gnu: sdl2: Add libxcursor to inputs.
adds dd39f16 gnu: jo: Update to 1.3.
adds 446316c gnu: diffoscope: Update to 131.
adds 39bf4e0 gnu: Add shell-functools.
adds 40df192 gnu: restic: Update to 0.9.6.
adds 9b0dae2 gnu: perl-test-simple: Update to 1.302169.
adds 8e77da0 gnu: bambam: Update to 1.0.0.
adds baac9ff gnu: gnunet-gtk: Set upstream ftp-directory.
adds edce199 gnu: gnunet: Update to 0.11.8.
adds dbdd770 gnu: gnunet-gtk: Update to 0.11.7.
adds 2f6500f gnu: gnunet-gtk: Sort inputs alphabetically.
adds 115ace6 gnu: imlib2: Update to 1.6.0.
adds e56d02a gnu: imlib2: Sort inputs alphabetically.
adds fea30e1 gnu: sparsehash: Don't use unstable tarball.
adds 609ba8d gnu: cinnamon-desktop: Don't use unstable tarball.
adds d40362f gnu: sfarklib: Don't use unstable tarball.
adds 898ac8e gnu: snappy: Don't use unstable tarball.
adds 298180c gnu: unshield: Don't use unstable tarball.
adds ff98386 gnu: innoextract: Don't use unstable tarball.
adds 46b0136 gnu: innoextract: Update to 1.8.
adds 8b1fd3c gnu: bioperl-minimal: Don't use unstable tarball.
adds 775373b gnu: coq-bignums: Don't use unstable tarball.
adds 31872b3 gnu: Add boost-static.
adds 3546771 gnu: libdivsufsort: Move to datastructures.scm.
adds 2b04bb3 gnu: sdsl-lite: Remove unused inputs.
adds aca2bf5 gnu: sdsl-lite: Don't use bundled libraries.
adds 46130b7 gnu: r-scales: Move to (gnu packages cran).
adds 54a8cb9 gnu: r-scales: Update to 1.1.0.
adds 5b720c1 gnu: r-pheatmap: Move to (gnu packages cran).
adds 0dc6277 gnu: r-digest: Update to 0.6.23.
adds 55bb00b gnu: r-rlang: Update to 0.4.2.
adds 7b4b113 gnu: r-rcppeigen: Update to 0.3.3.7.0.
adds 24edd27 gnu: Add r-effectsize.
adds 2cef54c gnu: r-insight: Update to 0.7.0.
adds 3d391d2 gnu: r-webshot: Update to 0.5.2.
adds 3b2c387 gnu: r-prodlim: Update to 2019.11.13.
adds f94705d gnu: r-limsolve: Update to 1.5.6.
adds a6828e0 gnu: r-abn: Update to 2.2.
adds eb6aad8 gnu: r-parameters: Update to 0.3.0.
adds 10faf81 gnu: r-tidyverse: Update to 1.3.0.
adds 3356eb5 gnu: r-sjplot: Update to 2.8.0.
adds 2eff036 gnu: r-tidytree: Update to 0.3.0.
adds 138fbdf gnu: r-rnifti: Update to 1.0.0.
adds 401cc85 gnu: r-protviz: Update to 0.5.1.
adds 19600e0 gnu: r-bookdown: Update to 0.16.
adds ea2884c gnu: Add bsequencer.
adds b5d4d5b gnu: guile-gi: Update to 0.2.1.
adds 2baed64 gnu: mes: Update to 0.21.
adds b674f87 gnu: r-vioplot: Update to 0.3.3.
adds 0ee5e9f gnu: r-epi: Update to 2.40.
adds 166995a gnu: r-future: Update to 1.15.1.
adds dae3458 gnu: r-rrcov: Update to 1.4-9.
adds 3776062 gnu: Add netcat-openbsd.
adds 79832fb gnu: linux-libre@4.14: Update to 4.14.156.
adds 6c693a6 gnu: linux-libre@4.19: Update to 4.19.86.
adds 5d297ca gnu: linux-libre: Update to 5.3.13.
adds 1d64afb tests: Avoid (catch 'srfi-34 …) form.
adds f5698df tests: Avoid unnecessary use of 'mock'.
adds d482e13 doc: cookbook: Use @lisp for Scheme snippets.
adds e97a4a2 doc: cookbook: Add cross-reference about ./pre-inst-env.
adds 0cbef07 doc: cookbook: Use Texinfo quotes.
adds cf1e6f5 doc: cookbook: Use @result{} & co. instead of a '>'
prompt.
adds 6a893fa doc: cookbook: Add cross-references to the Guile manual.
adds dc209d5 guix build, daemon: Rename "--no-build-hook" to
"--no-offload".
adds 7f44ab4 Use 'offload?' instead of 'build-hook?' internally.
adds 2ce08a5 guix build: '--keep-failed' implies '--no-offload'.
adds 3a4d5dd daemon: boost::format: Fix typo "referred".
adds f170603 gnu: Add libhx.
adds cd2ce8a gnu: Add pam-mount.
adds ae8a018 gnu: Add libdbi.
adds df81de8 gnu: Add libdbi-drivers.
adds 54a80b5 gnu: gnucash: Activate database support.
adds 70a60d6 gnu: emacs-dashboard: Update to 1.6.0.
adds ab6bddb gnu: guix-data-service: Update to 0.0.1-6.af13248.
adds 1a016d9 gnu: youtube-dl: Update to 2019.11.22.
adds 8ebf4e3 gnu: sddm: Fix output directory for QML files.
adds d1e4e64 guix: Fix wrap-qt-program.
adds 4ae8180 gnu: python-pyqt: Fix output directory for plugins.
adds 0d455d9 gnu: kdeconnect: Remove useless code.
adds ba40e1f doc: Fix typo.
adds bfa1579 gnupg: Update to 2.2.18.
adds b392de0 gnu: gnuastro: Update to 0.11.
adds 2894bd6 gnu: musescore: Update to 3.3.3.
adds 60ba9d8 gnu: pdfposter: Update to 0.7.post1.
adds 854d4d4 gnu: python-django-debug-toolbar: Don't use unstable
tarball.
adds 9f00d13 gnu: python-django-jinja: Don't use unstable tarball.
adds 4a3df6c gnu: emacs-solarized-theme: Don't use unstable tarball.
adds fbb162d gnu: emacs-better-defaults: Don't use unstable tarball.
adds 25f6b44 gnu: emacs-neotree: Don't use unstable tarball.
adds d1de1ab gnu: emacs-flx: Don't use unstable tarball.
adds 0dcb8e8 gnu: emacs-cyberpunk-theme: Don't use unstable tarball.
adds ed1ff94 gnu: emacs-auto-complete: Don't use unstable tarball.
adds 7335f46 gnu: emacs-pretty-mode: Don't use unstable tarball.
adds 2e1afa2 gnu: emacs-groovy-modes: Don't use unstable tarball.
adds c75d100 gnu: emacs-validate: Don't use unstable tarball.
adds b8e4626 gnu: emacs-m-buffer-el: Don't use unstable tarball.
adds b495fbf gnu: emacs-helm-mode-manager: Don't use unstable tarball.
adds 8361231 gnu: emacs-rsw-elisp: Don't use unstable tarball.
adds 67057b1 gnu: emacs-shift-number: Don't use unstable tarball.
adds 93cae74 gnu: linux-libre@4.4: Update to 4.4.203.
adds 778ae9f gnu: linux-libre@4.9: Update to 4.9.203.
adds 7281c8f gnu: Add helm.
adds 7f3bbfa ui: Adjust SRFI-34 exception handling to Guile 2.9.5.
adds 434138e substitute: Make '%allow-unauthenticated-substitutes?'
public.
adds 7738a72 daemon: GC remove-unused-links phase uses 'statx' when
available.
adds fbecb5c daemon: 'deletePath' uses 'statx' when available.
adds f9bd82e gnu: python-seaborn: Add patch to fix tests.
adds 9e7cb2f gnu: python-matplotlib: Update to 3.1.2.
adds a132276 gnu: python-seaborn: Disable matrix test.
adds 255bb7b gnu: denemo: Move some inputs to native-inputs.
adds f678cc9 gnu: Add glib-with-documentation.
adds 0eb59d9 gnu: r-quadprog: Move to (gnu packages cran).
adds 9bd56b1 gnu: r-desolve: Move to (gnu packages cran).
adds 682768d gnu: r-pracma: Move to (gnu packages cran).
adds ef7944b gnu: r-subplex: Move to (gnu packages cran).
adds f3640e7 gnu: Remove obsolete import of R build system module.
adds dcc7fad gnu: r-txtplot: Move to (gnu packages cran).
adds ff33752 gnu: Use the test-only Xorg variant for tests.
adds 38ae96e gnu: xorg-server: Update to 1.20.6.
adds 6039211 gnu: notmuch: Update to 0.29.3.
adds 7b5a120 gnu: xapian: Update to 1.4.14.
adds 164d0ad gnu: python-xapian-bindings: Sphinx is a native input.
adds 546c9fa gnu: bubblewrap: Update home page.
adds fd5ccec gnu: bubblewrap: Update to 0.4.0.
adds e1695f4 gnu: whois: Update to 5.5.3.
adds ba5ef99 gnu: python-dbus: Update to 1.2.14.
adds 9943d23 gnu: feh: Adapt tests for imlib2 1.6.
new 0897ad7 Merge branch 'master' into staging
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
config-daemon.ac | 3 +-
doc/guix-cookbook.texi | 203 ++++++++-------
doc/guix.texi | 37 +--
etc/completion/fish/guix.fish | 28 +-
etc/completion/zsh/_guix | 8 +-
gnu/build/vm.scm | 27 +-
gnu/local.mk | 10 +-
gnu/packages/admin.scm | 129 ++++++++++
gnu/packages/astronomy.scm | 4 +-
gnu/packages/backup.scm | 4 +-
gnu/packages/bioinformatics.scm | 46 +---
gnu/packages/boost.scm | 17 ++
gnu/packages/build-tools.scm | 4 +-
gnu/packages/c.scm | 66 ++---
gnu/packages/cinnamon.scm | 13 +-
gnu/packages/compression.scm | 43 ++--
gnu/packages/coq.scm | 11 +-
gnu/packages/cran.scm | 286 +++++++++++++++++----
gnu/packages/crypto.scm | 7 +-
gnu/packages/databases.scm | 90 +++++++
gnu/packages/datastructures.scm | 68 ++++-
gnu/packages/diffoscope.scm | 4 +-
gnu/packages/display-managers.scm | 2 +-
gnu/packages/django.scm | 29 ++-
gnu/packages/education.scm | 2 +-
gnu/packages/emacs-xyz.scm | 149 ++++++-----
gnu/packages/engineering.scm | 6 +-
gnu/packages/games.scm | 17 +-
gnu/packages/glib.scm | 29 +++
gnu/packages/gnome.scm | 36 +--
gnu/packages/gnucash.scm | 11 +-
gnu/packages/gnunet.scm | 95 ++++---
gnu/packages/gnupg.scm | 6 +-
gnu/packages/graphics.scm | 4 +-
gnu/packages/gtk.scm | 8 +-
gnu/packages/guile-xyz.scm | 71 ++++-
gnu/packages/guile.scm | 46 +++-
gnu/packages/image-processing.scm | 2 +-
gnu/packages/image-viewers.scm | 5 +-
gnu/packages/image.scm | 17 +-
gnu/packages/kde-frameworks.scm | 10 +-
gnu/packages/kde-plasma.scm | 2 +-
gnu/packages/kde.scm | 3 -
gnu/packages/libusb.scm | 40 ++-
gnu/packages/linux.scm | 23 +-
gnu/packages/mail.scm | 4 +-
gnu/packages/man.scm | 4 +-
gnu/packages/maths.scm | 95 +------
gnu/packages/mes.scm | 4 +-
gnu/packages/messaging.scm | 6 +-
gnu/packages/mpd.scm | 26 ++
gnu/packages/music.scm | 107 +++++++-
gnu/packages/networking.scm | 4 +-
gnu/packages/ocaml.scm | 5 +-
gnu/packages/parallel.scm | 4 +-
gnu/packages/password-utils.scm | 12 +-
.../patches/feh-fix-tests-for-imlib2-1.6.patch | 51 ++++
gnu/packages/patches/libseccomp-open-aarch64.patch | 27 ++
gnu/packages/patches/pam-mount-luks2-support.patch | 51 ++++
gnu/packages/patches/xsane-fix-memory-leak.patch | 34 +++
gnu/packages/patches/xsane-fix-pdf-floats.patch | 85 ++++++
.../patches/xsane-fix-snprintf-buffer-length.patch | 72 ++++++
gnu/packages/patches/xsane-support-ipv6.patch | 153 +++++++++++
.../patches/xsane-tighten-default-umask.patch | 36 +++
gnu/packages/pdf.scm | 12 +-
gnu/packages/perl-check.scm | 4 +-
gnu/packages/perl.scm | 49 ++--
gnu/packages/php.scm | 4 +-
gnu/packages/python-xyz.scm | 52 ++--
gnu/packages/qt.scm | 2 +-
gnu/packages/ruby.scm | 57 ++--
gnu/packages/scanner.scm | 89 +++++++
gnu/packages/sdl.scm | 1 +
gnu/packages/search.scm | 9 +-
gnu/packages/shellutils.scm | 23 ++
gnu/packages/sml.scm | 7 +-
gnu/packages/ssh.scm | 42 ++-
gnu/packages/statistics.scm | 110 ++------
gnu/packages/tls.scm | 33 +++
gnu/packages/video.scm | 4 +-
gnu/packages/vim.scm | 2 +-
gnu/packages/virtualization.scm | 8 +-
gnu/packages/web.scm | 14 +-
gnu/packages/xorg.scm | 15 +-
gnu/system/vm.scm | 15 +-
guix/build/compile.scm | 49 ++--
guix/build/qt-utils.scm | 4 +-
guix/import/texlive.scm | 8 +-
guix/profiles.scm | 5 +
guix/scripts/archive.scm | 2 +-
guix/scripts/build.scm | 17 +-
guix/scripts/copy.scm | 2 +-
guix/scripts/deploy.scm | 2 +-
guix/scripts/environment.scm | 2 +-
guix/scripts/offload.scm | 2 +-
guix/scripts/pack.scm | 19 +-
guix/scripts/package.scm | 52 ++--
guix/scripts/pull.scm | 2 +-
guix/scripts/substitute.scm | 164 ++++++------
guix/scripts/system.scm | 2 +-
guix/scripts/time-machine.scm | 2 +-
guix/store.scm | 11 +-
guix/ui.scm | 6 +-
guix/utils.scm | 8 +
nix/boost/format/exceptions.hpp | 4 +-
nix/libstore/gc.cc | 22 +-
nix/libutil/util.cc | 14 +
nix/nix-daemon/guix-daemon.cc | 7 +-
tests/build-utils.scm | 25 +-
tests/guix-environment.sh | 23 ++
tests/guix-pack.sh | 11 +
tests/guix-package.sh | 13 +
tests/profiles.scm | 5 +
tests/publish.scm | 1 +
tests/substitute.scm | 6 +-
115 files changed, 2482 insertions(+), 1061 deletions(-)
create mode 100644 gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch
create mode 100644 gnu/packages/patches/libseccomp-open-aarch64.patch
create mode 100644 gnu/packages/patches/pam-mount-luks2-support.patch
create mode 100644 gnu/packages/patches/xsane-fix-memory-leak.patch
create mode 100644 gnu/packages/patches/xsane-fix-pdf-floats.patch
create mode 100644 gnu/packages/patches/xsane-fix-snprintf-buffer-length.patch
create mode 100644 gnu/packages/patches/xsane-support-ipv6.patch
create mode 100644 gnu/packages/patches/xsane-tighten-default-umask.patch
- branch staging updated (6d460e8 -> 0897ad7),
guix-commits <=