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01/02: gnu: Add r-bsgenome-hsapiens-ncbi-grch38.
From: |
guix-commits |
Subject: |
01/02: gnu: Add r-bsgenome-hsapiens-ncbi-grch38. |
Date: |
Tue, 25 Feb 2020 09:37:35 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit c51c0033d00da046ff3fa573e99000b5b723cc05
Author: Mădălin Ionel Patrașcu <address@hidden>
AuthorDate: Tue Feb 25 14:52:25 2020 +0100
gnu: Add r-bsgenome-hsapiens-ncbi-grch38.
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ncbi-grch38): New
variable.
Signed-off-by: Ricardo Wurmus <address@hidden>
---
gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e004560..e14f7bc 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -224,6 +224,30 @@ Finder (TRF mask). Only the AGAPS and AMB masks are
\"active\" by default.")
1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.")
(license license:artistic2.0)))
+(define-public r-bsgenome-hsapiens-ncbi-grch38
+ (package
+ (name "r-bsgenome-hsapiens-ncbi-grch38")
+ (version "1.3.1000")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BSgenome.Hsapiens.NCBI.GRCh38"
+ version 'annotation))
+ (sha256
+ (base32
+ "0y75qdq578fh6420vbvsbwmdw8jvr3g06qli2h3vj3pxmjykh9c1"))))
+ (properties `((upstream-name . "BSgenome.Hsapiens.NCBI.GRCh38")))
+ (build-system r-build-system)
+ (propagated-inputs `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "https://bioconductor.org/packages/release/data/annotation/html/\
+BSgenome.Hsapiens.NCBI.GRCh38.html")
+ (synopsis "Full genome sequences for Homo sapiens (GRCh38)")
+ (description
+ "This package provides full genome sequences for Homo sapiens (Human) as
+provided by NCBI (GRCh38, 2013-12-17) and stored in Biostrings objects.")
+ (license license:artistic2.0)))
+
(define-public r-bsgenome-hsapiens-ucsc-hg19-masked
(package
(name "r-bsgenome-hsapiens-ucsc-hg19-masked")