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22/163: gnu: python-scanpy: Do not set PYTHONPATH.
From: |
guix-commits |
Subject: |
22/163: gnu: python-scanpy: Do not set PYTHONPATH. |
Date: |
Mon, 25 Jan 2021 02:01:20 -0500 (EST) |
apteryx pushed a commit to branch cu/farewell-to-pythonpath
in repository guix.
commit f378e13135ae74b01048f955d633408ce0d580e1
Author: Maxim Cournoyer <maxim.cournoyer@gmail.com>
AuthorDate: Fri Jan 22 16:25:56 2021 -0500
gnu: python-scanpy: Do not set PYTHONPATH.
* gnu/packages/bioinformatics.scm (python-scanpy)[phases]
{check}: Do not set PYTHONPATH.
---
gnu/packages/bioinformatics.scm | 6 +-----
1 file changed, 1 insertion(+), 5 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 043f97f..720d32d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12932,11 +12932,7 @@ in RNA-seq data.")
(delete-file "scanpy/tests/test_preprocessing.py")
(delete-file "scanpy/tests/test_read_10x.py")
- (setenv "PYTHONPATH"
- (string-append (getcwd) ":"
- (getenv "PYTHONPATH")))
- (invoke "pytest")
- #t)))))
+ (invoke "pytest"))))))
(propagated-inputs
`(("python-anndata" ,python-anndata)
("python-h5py" ,python-h5py)
- branch cu/farewell-to-pythonpath created (now c8e1f2c), guix-commits, 2021/01/25
- 01/163: utils: Add a version-minor procedure., guix-commits, 2021/01/25
- 07/163: build/python: Adjust wrap phase to use the new GUIX_PYTHONPATH., guix-commits, 2021/01/25
- 09/163: gnu: dstat: Adjust wrap phase., guix-commits, 2021/01/25
- 10/163: gnu: solaar: Do not read PYTHONPATH from environment., guix-commits, 2021/01/25
- 04/163: build/python: Replace PYTHONPATH by GUIX_PYTHONPATH_X_Y in add-installed-pythonpath., guix-commits, 2021/01/25
- 18/163: gnu: couger: Adjust wrap phase., guix-commits, 2021/01/25
- 11/163: gnu: intel-xed: Adjust build phase., guix-commits, 2021/01/25
- 03/163: build/python: Add a new guix-pythonpath procedure., guix-commits, 2021/01/25
- 22/163: gnu: python-scanpy: Do not set PYTHONPATH.,
guix-commits <=
- 21/163: gnu: filtlong: Adjust wrap phase., guix-commits, 2021/01/25
- 24/163: gnu: cdemu-client: Wrap with the new Guix PYTHONPATH., guix-commits, 2021/01/25
- 25/163: gnu: python-loompy: Do not set PYTHONPATH., guix-commits, 2021/01/25
- 54/163: gnu: ibus-anty: Wrap with the new Guix PYTHONPATH., guix-commits, 2021/01/25
- 58/163: gnu: python-django-contact-form: Do not alter PYTHONPATH., guix-commits, 2021/01/25
- 65/163: gnu: kicad: Wrap with the new Guix PYTHONPATH., guix-commits, 2021/01/25
- 62/163: gnu: python-django-statici18n: Do not read PYTHONPATH., guix-commits, 2021/01/25
- 35/163: gnu: gitless: Wrap with the new Guix PYTHONPATH., guix-commits, 2021/01/25
- 41/163: gnu: blanket: Wrap with the new Guix PYTHONPATH., guix-commits, 2021/01/25
- 71/163: gnu: notifymuch: Wrap with the new Guix PYTHONPATH., guix-commits, 2021/01/25