01/04: gnu: r-bisquerna: Move to (gnu packages bioconductor).

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 172b85aa99e62f3b765df530f38e465c7eb4ac8d
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Wed Mar 17 21:14:12 2021 +0100

    gnu: r-bisquerna: Move to (gnu packages bioconductor).
    
    * gnu/packages/cran.scm (r-bisquerna): Move this variable from here...
    * gnu/packages/bioconductor.scm (r-bisquerna): ...to here.
---
 gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
 gnu/packages/cran.scm         | 25 -------------------------
 2 files changed, 26 insertions(+), 25 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0bcd9a6..8782241 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1315,6 +1315,32 @@ naming and share the same rich and consistent \"Vector 
API\" as much as
 possible.")
     (license license:artistic2.0)))
 
+;; This is a CRAN package, but it depends on r-biobase from Bioconductor.
+(define-public r-bisquerna
+  (package
+   (name "r-bisquerna")
+   (version "1.0.4")
+   (source (origin
+            (method url-fetch)
+            (uri (cran-uri "BisqueRNA" version))
+            (sha256
+             (base32
+              "01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2"))))
+   (properties `((upstream-name . "BisqueRNA")))
+   (build-system r-build-system)
+   (propagated-inputs
+    `(("r-biobase" ,r-biobase)
+      ("r-limsolve" ,r-limsolve)))
+   (home-page "https://www.biorxiv.org/content/10.1101/669911v1";)
+   (synopsis "Decomposition of bulk expression with single-cell sequencing")
+   (description "This package provides tools to accurately estimate cell type
+abundances from heterogeneous bulk expression.  A reference-based method
+utilizes single-cell information to generate a signature matrix and
+transformation of bulk expression for accurate regression based estimates.
+A marker-based method utilizes known cell-specific marker genes to measure
+relative abundances across samples.")
+   (license license:gpl3)))
+
 ;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19
 ;; from Bioconductor.
 (define-public r-deconstructsigs
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index e90e2b3..18a614e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2839,31 +2839,6 @@ where the bound function accepts additional arguments.")
 bindings that call a C++ function.")
     (license license:expat)))
 
-(define-public r-bisquerna
-  (package
-   (name "r-bisquerna")
-   (version "1.0.4")
-   (source (origin
-            (method url-fetch)
-            (uri (cran-uri "BisqueRNA" version))
-            (sha256
-             (base32
-              "01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2"))))
-   (properties `((upstream-name . "BisqueRNA")))
-   (build-system r-build-system)
-   (propagated-inputs
-    `(("r-biobase" ,r-biobase)
-      ("r-limsolve" ,r-limsolve)))
-   (home-page "https://www.biorxiv.org/content/10.1101/669911v1";)
-   (synopsis "Decomposition of bulk expression with single-cell sequencing")
-   (description "This package provides tools to accurately estimate cell type
-abundances from heterogeneous bulk expression.  A reference-based method
-utilizes single-cell information to generate a signature matrix and
-transformation of bulk expression for accurate regression based estimates.
-A marker-based method utilizes known cell-specific marker genes to measure
-relative abundances across samples.")
-   (license license:gpl3)))
-
 (define-public r-auc
   (package
     (name "r-auc")