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branch master updated: gnu: Add r-mbkmeans.
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guix-commits |
Subject: |
branch master updated: gnu: Add r-mbkmeans. |
Date: |
Wed, 26 May 2021 17:49:47 -0400 |
This is an automated email from the git hooks/post-receive script.
roelj pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 700b10f gnu: Add r-mbkmeans.
700b10f is described below
commit 700b10f1810a90c49c0403cfec40ad3223cbe805
Author: Roel Janssen <roel@gnu.org>
AuthorDate: Wed May 26 23:49:28 2021 +0200
gnu: Add r-mbkmeans.
* gnu/packages/bioconductor.scm (r-mbkmeans): New variable.
---
gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 23a87c3..39f2a81 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3075,6 +3075,38 @@ package comprehensively addressing issues ranging from
post-alignments
processing to visualization and annotation.")
(license license:gpl2)))
+(define-public r-mbkmeans
+ (package
+ (name "r-mbkmeans")
+ (version "1.6.1")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "mbkmeans" version))
+ (sha256
+ (base32
+ "0rc83mh9xzwczfn88j0xah86ldzi1kdfqgd938nj57ifx3zci4xh"))))
+ (build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (propagated-inputs
+ `(("r-delayedarray" ,r-delayedarray)
+ ("r-rcpp" ,r-rcpp)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-singlecellexperiment" ,r-singlecellexperiment)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-clusterr" ,r-clusterr)
+ ("r-benchmarkme" ,r-benchmarkme)
+ ("r-matrix" ,r-matrix)
+ ("r-bluster" ,r-bluster)
+ ("r-beachmat" ,r-beachmat)
+ ("r-rhdf5lib" ,r-rhdf5lib)
+ ("r-biocparallel" ,r-biocparallel)))
+ (home-page "https://bioconductor.org/packages/mbkmeans")
+ (synopsis "Mini-batch k-means clustering for single-cell RNA-seq")
+ (description "This package implements the mini-batch k-means algorithm for
+large datasets, including support for on-disk data representation.")
+ (license license:expat)))
+
(define-public r-multtest
(package
(name "r-multtest")
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