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branch master updated: gnu: Add python-htsget.
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guix-commits |
Subject: |
branch master updated: gnu: Add python-htsget. |
Date: |
Thu, 27 May 2021 16:51:09 -0400 |
This is an automated email from the git hooks/post-receive script.
roelj pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new a30e616 gnu: Add python-htsget.
a30e616 is described below
commit a30e616cccc850f0c9ad809be7db82729f46d0d8
Author: Roel Janssen <roel@gnu.org>
AuthorDate: Thu May 27 22:50:46 2021 +0200
gnu: Add python-htsget.
* gnu/packages/bioinformatics.scm (python-htsget): New variable.
---
gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index af1010f..6f3bc96 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -846,6 +846,30 @@ input/output delimiter. When the new functionality is not
used, bioawk is
intended to behave exactly the same as the original BWK awk.")
(license license:x11)))
+(define-public python-htsget
+ (package
+ (name "python-htsget")
+ (version "0.2.5")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "htsget" version))
+ (sha256
+ (base32
+ "0ic07q85vhw9djf23k57b21my7i5xp400m8gfqgr5gcryqvdr0yk"))))
+ (build-system python-build-system)
+ (native-inputs
+ `(("python-setuptools-scm" ,python-setuptools-scm)))
+ (propagated-inputs
+ `(("python-humanize" ,python-humanize)
+ ("python-requests" ,python-requests)
+ ("python-six" ,python-six)))
+ (home-page "https://pypi.org/project/htsget/")
+ (synopsis "Python API and command line interface for the GA4GH htsget API")
+ (description "This package is a client implementation of the GA4GH htsget
+protocol. It provides a simple and reliable way to retrieve genomic data from
+servers supporting the protocol.")
+ (license license:asl2.0)))
+
(define-public python-pybedtools
(package
(name "python-pybedtools")
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