03/15: gnu: bowtie: Replace invalid characters.

[guix-commits]

rekado pushed a commit to branch core-updates-frozen
in repository guix.

commit f336cc4fe739819115c99bc58122024241640cab
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sun Oct 24 18:44:57 2021 +0000

    gnu: bowtie: Replace invalid characters.
    
    * gnu/packages/bioinformatics.scm (bowtie)[arguments]: Replace invalid 
quotes
    with straight quotes in the 'configure phase.
---
 gnu/packages/bioinformatics.scm | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4743e56..c03ffaf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1701,7 +1701,12 @@ errors at the end of reads.")
              (string-append "prefix=" (assoc-ref %outputs "out")))
        #:phases
        (modify-phases %standard-phases
-         (delete 'configure)
+         (replace 'configure
+           (lambda _
+             ;; This "extended character" is not considered valid.
+             (substitute* "processor_support.h"
+               (("“") "\"")
+               (("”") "\""))))
          (replace 'check
            (lambda _
              (invoke "perl"